Abstract
ObjectivesCorals, the building blocks of reef ecosystems, have been severely threatened by climate change. Coral bleaching, the loss of the coral’s endosymbiotic algae, occurs as a consequence of increasing ocean temperature. To understand mechanisms of stress tolerance in symbiotic cnidarians, the sea anemone Exaiptasia pallida from different regions was heat stressed. The three strains originated from the Red Sea, Hawaii and North Carolina, each with different temperature profiles, enabling a comparative study of local adaptation strategies.Data descriptionWhole transcriptome and proteome data were collected from all anemones at control and stress condition. As part of the analysis of this large, multi-omic data, we wrote a script that creates a tabular datasheet that summarized the transcriptomic and proteomic changes for every gene. It facilitates the search of individual genes, or a group of genes, their up- or downregulation during stress and whether this change in expression was statistically significant. Furthermore, it enables examining if changes in RNA correspond to those in proteins. The datasheet can be used for future comparisons, as well as search and development of biomarkers.
Highlights
*Correspondence: maha.olschowsky@kaust.edu.sa; manuel.aranda@kaust.edu.sa 1 Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia Full list of author information is available at the end of the article temperature and whether origin influences the stress response of symbiotic cnidarians, we conducted full transcriptome and proteome analysis of the coral-symbiosis model organisms the anemone Exaiptasia
We created a datasheet that summarized all of our gene expression response on both transcriptomic and proteomic level
We realized that this data format could be a useful tool to anyone working on large-omic datasets, as it condenses an extensive amount of sequencing information into an easy to use spreadsheet
Summary
Data description: Whole transcriptome and proteome data were collected from all anemones at control and stress condition. As part of the analysis of this large, multi-omic data, we wrote a script that creates a tabular datasheet that summarized the transcriptomic and proteomic changes for every gene. *Correspondence: maha.olschowsky@kaust.edu.sa; manuel.aranda@kaust.edu.sa 1 Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia Full list of author information is available at the end of the article temperature and whether origin influences the stress response of symbiotic cnidarians, we conducted full transcriptome and proteome analysis of the coral-symbiosis model organisms the anemone Exaiptasia.
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