Study on transcriptome of Oncomelania hupensis before and after Schistosoma japonicum invasion I De novo assembly of data by RNA-Seq

Abstract

To produce a comprehensive transcript dataset of Oncomelania hupensis before and after Schistosoma japonicum infection, so as to provide experimental data for perfecting genetic structural information and excavating related molecular markers of O. hupensis infected by S. japonicum. O. hupensis snails were divided into the following 3 groups: one week after S. japonicum miracidium infection, 4 weeks after S. japonicum miracidium infection, and normal condition. Million high-quality reads were obtained from the normalized cDNA of the pooled samples, which were assembled into transcripts. A total of 63 686 unigenes were identified and were classified into 4 main categories, including general functional prediction (15.36%), signal transduction mechanism (11.75%), posttranslational modification (8.89%), and functional unknown (12.20%). The transcriptome information of O. hupensis snail after the invasion of S. japonicum shows that several genes are significantly up-regulated or down regulated expression, and that the availability of transcriptome information might provide a strong foundation for further understanding the schistosome-snail interaction at the molecular level.