Abstract

Constitutively activated variants of small GTPases, which provide valuable functional probes of their role in cellular signaling pathways, can often be generated by mutating the canonical catalytic residue (e.g. Ras Q61L) to impair GTP hydrolysis. However, this general approach is ineffective for a substantial fraction of the small GTPase family in which this residue is not conserved (e.g. Rap) or not catalytic (e.g. Rheb). Using a novel engineering approach, we have manipulated nucleotide binding through structure-guided substitutions of an ultraconserved glycine residue in the G3-box motif (DXXG). Substitution of Rheb Gly-63 with alanine impaired both intrinsic and TSC2 GTPase-activating protein (GAP)-mediated GTP hydrolysis by displacing the hydrolytic water molecule, whereas introduction of a bulkier valine side chain selectively blocked GTP binding by steric occlusion of the γ-phosphate. Rheb G63A stimulated phosphorylation of the mTORC1 substrate p70S6 kinase more strongly than wild-type, thus offering a new tool for mammalian target of rapamycin (mTOR) signaling.

Highlights

  • GTPases regulate cellular signaling by cycling between GDP-(inactive) and GTP-(active) bound states

  • Prior to nucleotide exchange assays, the GTPase proteins were incubated at room temperature for a minimum of a week and monitored by 1H-15N heteronuclear single-quantum coherence (HSQC) spectra to ensure that E. coli-derived GTP had hydrolyzed, and exchange reactions were initiated by the addition of 1.5 mM GTP (5-fold molar excess)

  • Crystals of Ras homolog enriched in brain (Rheb) WT and G63A mutant were soaked in a solution containing 20 mM GTP and 25% polyethylene glycol 400 for 2 h at room temperature to allow nucleotide exchange, whereas G63V crystals were soaked in 25% polyethylene glycol 400 alone

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Summary

Background

GTPases regulate cellular signaling by cycling between GDP-(inactive) and GTP-(active) bound states. Activated variants of small GTPases, which provide valuable functional probes of their role in cellular signaling pathways, can often be generated by mutating the canonical catalytic residue (e.g. Ras Q61L) to impair GTP hydrolysis. Structural and enzymatic studies of Ras have shown that the carboxamide oxygen of this glutamine side chain (Gln-61) catalyzes GTP hydrolysis by increasing the nucleophilicity of a hydrolytic water molecule (H2Ocat) positioned in-line with the ␥-phosphate [4] This mechanism is conserved among many GTPases, this residue is substituted in one-quarter of small GTPases, and in some Ras superfamily members, this glutamine is present but noncatalytic. We sought to develop novel strategies to control the GTPase cycle of Rheb and other GTPase proteins that lack the canonical catalytic machinery

EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
D G63V GDP
Full Text
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