Abstract

Cadherins are a large family of transmembrane calcium-dependent cell adhesion proteins that orchestrate adherens junction formation and are crucially involved in tissue morphogenesis. Due to their important role in cancer development and metastasis, cadherins can be considered attractive targets for drug discovery. A recent crystal structure of the complex of a cadherin extracellular portion and a small molecule inhibitor allowed the identification of a druggable interface, thus providing a viable strategy for the design of cadherin dimerization modulators. Here, we report on a structure-based virtual screening approach that led to the identification of efficient and selective modulators of E-cadherin-mediated cell–cell adhesion. Of all the putative inhibitors that were identified and experimentally tested by cell adhesion assays using human pancreatic tumor BxPC-3 cells expressing both E-cadherin and P-cadherin, two compounds turned out to be effective in inhibiting stable cell–cell adhesion at micromolar concentrations. Moreover, at the same concentrations, one of them also showed anti-invasive properties in cell invasion assays. These results will allow further development of novel and selective cadherin-mediated cell–cell adhesion modulators for the treatment of a variety of cadherin-expressing solid tumors and for improving the efficiency of drug delivery across biological barriers.

Highlights

  • Cadherins are transmembrane calcium-dependent molecules that mediate cell–cell adhesion through a concerted dimerization and oligomerization mechanism whereby proteins protruding from opposing cells interact with each other and form an extensive adhesive network at the cellular adherens junctions

  • In our high-throughput docking (HTPD) screening, two sets of commercially available compounds were docked to the crystal structure of human E-cadherin-EC1EC2 in X-dimer conformation, as derived from the E-cadherin-FR159 complex (PDB code: 4ZTE) [27]

  • Prior to that, using molecular dynamics simulations, we partially rebuilt the protein in order to reintroduce the two N-terminal residues that were removed in the construct that led to the crystal structure

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Summary

Introduction

Cadherins are transmembrane calcium-dependent molecules that mediate cell–cell adhesion through a concerted dimerization and oligomerization mechanism whereby proteins protruding from opposing cells interact with each other and form an extensive adhesive network at the cellular adherens junctions. Altered expression profiles of epithelial E-cadherin (CDH1) and neuronal N-cadherin (CDH2). Have often been observed in cancer cells, most notably in the context of the epithelial-to-mesenchymal transition (EMT) process that occurs during cancer progression [1,2]. While E-cadherin is down-regulated in the majority of carcinomas, some epithelial ovarian cancer (EOC) cells are characterized by high expression levels of E-cadherin, which facilitates proliferation [3].

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