Abstract

Streptosporangium sibiricum SibL catalyzes the methyl transfer from S-adenosylmethionine (SAM) to 3-hydroxykynurenine (3-HK) to produce S-adenosylhomocysteine (SAH) and 3-hydroxy-4-methyl-kynurenine for sibiromycin biosynthesis. Here, we present the crystal structures of apo-form Ss-SibL, Ss-SibL/SAH binary complex and Ss-SibL/SAH/3-HK ternary complex. Ss-SibL is a homodimer. Each subunit comprises a helical N-terminal domain and a Rossmann-fold C-terminal domain. SAM (or SAH) binding alone results in domain movements, suggesting a two-step catalytic cycle. Analyses of the enzyme-ligand interactions and further mutant studies support a mechanism in which Tyr134 serves as the principal base in the transferase reaction of methyl group from SAM to 3-HK.

Highlights

  • Sibiromycin, anthramycin and tomaymycin are PBD derivatives with a pharmacophore consisting of a tricyclic moiety that is biosynthesized by combining l-tryptophan, l-tyrosine, and l-methionine[2,8]

  • Evidence suggests that the family of natural product methyltransferases (NPMTs) is a result of concomitant gene fusions, which led to neofunctionalization of substrate recognition by new domains[20,21,22,23]

  • The Ss-SibL/SAH crystals were obtained by using SAM, the methyl group lacked corresponding densities and the ligand could only be modeled as the demethylated product (Fig. 2b)

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Summary

Introduction

Sibiromycin, anthramycin and tomaymycin are PBD derivatives with a pharmacophore consisting of a tricyclic moiety (anthranilate, diazepine, and hydropyrrole) that is biosynthesized by combining l-tryptophan, l-tyrosine, and l-methionine[2,8]. The Ss-SibL/SAH crystals were obtained by using SAM, the methyl group lacked corresponding densities and the ligand could only be modeled as the demethylated product (Fig. 2b).

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