Structural Stability of V-Amylose Helices in Water-DMSO Mixtures Analyzed by Molecular Dynamics.

Abstract

Computational techniques have been employed to fundamentally understand the behavior of helically structured amylose in water/DMSO mixtures. Using a computationally generated amylose helix of 55 glucose residues, we have investigated the time-dependent behavior of intra- and intermolecular hydrogen bonds, particularly between O2 and O3 of adjacent glucose molecules and between O6 and neighboring O2 and O3 groups. The helix character was defined by the total number of residually existing hydrogen bonds. Our results parallel the experimental finding that increasing the percentage of DMSO results in increasing helical stability. It can be shown that O6-O2/O3 hydrogen bonds are preferentially lost when the helix starts to unfold to a finally resulting random coil structure. While water is small enough to interact with every hydroxyl group at the helix surface and finally penetrate the helix coil, DMSO can initially only form single hydrogen bonds to part of the OH groups of the amylose molecule, thereby allowing a longer conservation of intramolecular hydrogen bonds that are necessary to maintain the helix. However, given a long enough time for interaction, the helical structure of amylose is lost in water as well as in DMSO, yielding a random orientation of the glucose strand.