Abstract

The structural organization of chromosomal partition assembly, which participates in chromosome partition in many bacteria, is poorly characterized. The partition protein ParB spreads on a large segment of DNA encompassing the centromeric parS site(s) to form the partition assembly, which is a higher order nucleoprotein complex of unknown nature. The partition assembly interacts with a number of proteins with diverse biological roles such as ParA, SMC proteins and origin tethering factors. We characterized the cross-sectional size parameters and internal organization of the partition assembly using solution X-ray and neutron scattering with hydrogen/deuterium contrast variation. Our data is consistent with a “DNA outside, protein inside” mode of partition assembly organization, in which the DNA is wrapping the protein from outside. In addition, we showed that mycobacterial ParA forms apparently ring-shaped polymers in vitro by electron microscopy. Based on our data, a testable model of interaction between the ParA polymer and the ParB-DNA partition assembly is proposed.

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