Abstract

The human CST complex (CTC1–STN1–TEN1) is associated with telomere functions including genome stability. We have systemically analyzed the sequence of STN and performed structure analysis to establish its association with the Coat Plus (CP) syndrome. Many deleterious non-synonymous SNPs have been identified and subjected for structure analysis to find their pathogenic association and aggregation propensity. A 100-ns all-atom molecular dynamics simulation of WT, R135T, and D157Y structures revealed significant conformational changes in the case of mutants. Changes in hydrogen bonds, secondary structure, and principal component analysis further support the structural basis of STN1 dysfunction in such mutations. Free energy landscape analysis revealed the presence of multiple energy minima, suggesting that R135T and D157Y mutations destabilize and alter the conformational dynamics of STN1 and thus may be associated with the CP syndrome. Our study provides a valuable direction to understand the molecular basis of CP syndrome and offer a newer therapeutics approach to address CP syndrome.

Highlights

  • Telomere is a complex of protein and nucleic acid, crucial for protecting chromosome ends from degradation, end-to-end chromosome fusion, and activation of DNA damage response (DDR) (de Lange, 2009)

  • The atomistic levels of two pathogenic mutations (R135T and D157Y) causing Coat Plus (CP) syndrome have been analyzed in detail using all-atom molecular dynamics (MD) simulation approach

  • We have investigated the effect of deleterious or destabilizing mutations in the STN1 protein that are presumably associated with the CP syndrome

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Summary

Introduction

Telomere is a complex of protein and nucleic acid, crucial for protecting chromosome ends from degradation, end-to-end chromosome fusion, and activation of DNA damage response (DDR) (de Lange, 2009). The CST complex (CTC1–STN1–TEN1) plays a vital role in the synthesis of C-strand of telomere (Chen and Lingner, 2013) and helps in genome-wide replication and recovery from replication fork stalling during replication stress (Stewart et al, 2012, 2018). Interruption of CST complex directly affecting the Mutational Spectrum in STN1 Gene synthesis of C-strand and telomere length leads to the formation of elongated 3′ overhang (Gu et al, 2012)

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