Abstract

Light is an important environmental variable and most organisms have evolved means to sense, exploit or avoid it and to repair detrimental effects on their genome. In general, light absorption is the task of specific chromophores, however other biomolecules such as oligonucleotides also do so which can result in undesired outcomes such as mutations and cancer. Given the biological importance of light-induced processes and applications for imaging, optogenetics, photodynamic therapy or photovoltaics, there is a great interest in understanding the detailed molecular mechanisms of photoinduced processes in proteins and nucleic acids. The processes are typically characterized by time-resolved spectroscopic approaches or computation, inferring structural information on transient species from stable ground state structures. Recently, however, structure determination of excited states or other short-lived species has become possible with the advent of X-ray free-electron lasers. This review gives an overview of the impact of structure on the understanding of photoinduced processes in macromolecules, focusing on systems presented at this Faraday Discussion meeting.

Highlights

  • Recent developments in ultrafast spectroscopy, computational chemistry and in particular time-resolved crystallography have provided unprecedented and novel insights into the very early processes induced by photon absorption, which so far had been difficult to investigate

  • Each microcrystal yields a single diffraction pattern upon X-ray free-electron lasers (XFELs) pulse exposure before it is destroyed by subsequent damage effects, necessitating high throughput serial data collection, an approach called serial femtosecond crystallography (SFX)

  • Light-induced double bond isomerizations occur in the chromophores of various photoreceptors, including tetrapyrrole in phytochromes, p-coumaric acid in photoactive yellow protein, retinal in rhodopsins and 4-(p-hydroxybenzylidene) imidazolidin-5-one in uorescent proteins (Scheme 2)

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Summary

Introduction

Organisms have evolved photosensory proteins that sense most of the spectral region, enabling phototaxis or photoavoidance, allowing us to see, and providing clues to e.g. synchronize daily rhythms Understanding these processes has an impact on human health (melanoma, jet lag, photodynamic cancer therapy.) and on sustainable energy sources by inspiring photovoltaic systems that use solar energy to produce electrical current. Recent developments in ultrafast spectroscopy, computational chemistry and in particular time-resolved crystallography have provided unprecedented and novel insights into the very early processes induced by photon absorption, which so far had been difficult to investigate Taken together, this information provides a detailed understanding of how the early excited-state relaxation couples to the protein matrix and how protein dynamics shapes early photodynamics and the subsequent photochemical events. It will be interesting to see common themes and variations emerge

Photoinduced DNA damage and repair by photoreactivation
DNA repair by photolyase
Time-resolved crystallography
Double bond isomerization in photoactive proteins
Rhodopsins
Fluorescent proteins
Photoactive yellow protein
Ligand dissociation from myoglobin
Findings
Conclusions and challenges

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