Abstract

Accurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of ambiguous morphological characters for descriptions. Here we establish species boundaries for Bryconamericus, Hemibrycon, Knodus and Eretmobrycon (Stevardiinae: Characidae), previously diagnosed with morphology, using three different barcoding approaches (GMYC, PTP, ABGD). Results revealed that species delimitation was successful by the use of a single-gene approach and by following a workflow in the context of integrative taxonomy, making evident problems and mistakes in the cataloging of Characidae species. Hence, it was possible to infer boundaries at genus level for clusters in the trees (GMYC and PTP) and automatic partitions (ABGD) which were consistent with some of recent taxonomic changes proposed in Characidae. We found that discordance cases between methods were linked to limitations of the methods and associated to putative species cluster closely related, some historically problematic in their diagnosis and identification. Furthermore, we suggested taxonomic changes and possibly new species, revealing a high degree of hidden diversity. Finally, we propose a workflow as a fast, accurate and objective way to delimit species from mitochondrial DNA sequences and to help clarify the classification of this group.

Highlights

  • Considering the delimitation species issues in Bryconamericus, Eretmobrycon, Hemibrycon and Knodus based on morphologic characteristics, the aims of the present study were to compare the putative species recovered using species delimitation models based on genetic data (GMYC, Poisson Tree Processes (PTP), Automatic Barcode Gap Discovery (ABGD)) with those established by morphology alone and to discuss how methods with different assumptions can help with taxonomy and species delimitation within the Stevardiinae group

  • The optimal gene trees produced by neighbor−joining (NJ) Kimura 2 Parameter and maximum likelihood (ML) analysis showed nearly similar species delimitation in which the branch tips within OTUs were short, and OTUs were separated by longer branches (S2 Fig and S3 Fig)

  • According to integrative taxonomy analysis we found 72 OTUs recovered with all methodologies including initial morphological assessment (Fig 2), so the 45.2% of the delimited species were in accordance with genetic and morphological criteria, which was close to the unified species concept proposed by de Queiroz [90] and resulted in clearly delimited putative species in all four clades

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Summary

Introduction

The accelerated loss of biodiversity and the high number of species that have yet to be described have generated a ‘taxonomy crisis’ and the need for more effective ways to discover. Investigaciones, Pontificia Universidad Javeriana (Project N 00006552) (www.javeriana.edu.co). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

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