Sources and Pollution Characteristics of Antibiotic Resistance Genes and Conditional Pathogenic Bacteria in Concentrated Poultry Feeding Operations

Abstract

Concentrated animal feeding operations (CAFOs) is considered a source of airborne human pathogens and antibiotic resistance genes. This study collected fecal samples and corresponding air samples from inside and outside atmospheric environments of layer and broiler feeding operations. We detected the types of 61 genes including five classes of antibiotics antibiotic resistance genes (23 genes of ampicillin, 23 genes of tetracycline, 5 genes of quinolones, 5 genes of sulfonamides and 2 genes of erythromycin), five conditional pathogenic bacteria (Enterococcus, Escherichia coli, Staphylococcus, Campylobacter and Clostridium perfringens) and class1 integron. Quantitative real time PCR was used to analyze concentrations of typical genes with relatively high detection rates. The results indicated that the detection rates of antibiotic resistance genes were 8,7,2,3 and 2. At the same time, two kinds of pathogenic bacteria were detected. The detection rates of the target genes in the air were lower than those of the fecal sample. The total bacterial gene (16S rDNA) concentration in the air of layer and broiler was 106 copies·m-3, and that of the other typical genes was about 104copies·m-3. And the outdoor concentration was much lower than the indoor concentration. The proportions of antibiotic resistance genes and conditional pathogenic bacteria in the air were higher than those in the fecal samples and the outdoor proportions were lower than the indoor proportions. Preliminary results of this study indicated that feces was an important source of antibiotic resistance genes, conditional pathogenic bacteria and class1 integron. Aerosolization degrees of genes in feces were different. This study will provide the basic data for both source tracking of antibiotic resistance genes and pathogens from CAFOs and risk assessment of pollution of CAFOs in the surrounding air environment.