Abstract

In the evolutionary arms race, symbionts have evolved means to modulate each other's physiology, oftentimes through the dissemination of biological signals. Beyond small molecules and proteins, recent evidence shows that small RNA molecules are transferred between organisms and transmit functional RNA interference signals across biological species. However, the mechanisms through which specific RNAs involved in cross-species communication are sorted for secretion and protected from degradation in the environment remain largely enigmatic. Over the last decade, extracellular vesicles have emerged as prominent vehicles of biological signals. They can stabilize specific RNA transcripts in biological fluids and selectively deliver them to recipient cells. Here, we review examples of small RNA transfers between plants and bacterial, fungal, and animal symbionts. We also discuss the transmission of RNA interference signals from intestinal cells to populations of the gut microbiota, along with its roles in intestinal homeostasis. We suggest that extracellular vesicles may contribute to inter-species crosstalk mediated by small RNA. We review the mechanisms of RNA sorting to extracellular vesicles and evaluate their relevance in cross-species communication by discussing conservation, stability, stoichiometry, and co-occurrence of vesicles with alternative communication vehicles.

Highlights

  • The “one gene, one enzyme” paradigm has long dominated our understanding of molecular biology

  • Knock out of B. cinerea dcl genes depleted sRNA pools and reduced virulence upon Arabidopsis and Solanum inoculation. These results show that fungal Dicer and plant Ago1 are involved in Bc-siRNA3.1, Bc-siRNA3.2, and BcsiRNA5-induced gene silencing in Arabidopsis

  • Liu et al (2016) does not directly demonstrate that host miRNA populations are transferred via extracellular vesicles (EVs), the study shows that sequences enriched in fecal EVs are involved in cross-kingdom RNA interference (RNAi)

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Summary

Introduction

The “one gene, one enzyme” paradigm has long dominated our understanding of molecular biology. Liu et al (2016) does not directly demonstrate that host miRNA populations are transferred via EVs, the study shows that sequences enriched in fecal EVs are involved in cross-kingdom RNAi. Interestingly, in mice, EVs have been identified as a communication vehicle between intestinal epithelial cells and the immune system enabling MHCII protein transfers (Van Niel et al, 2003).

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