Single‐Cell Sequencing in the Genetic Model of Mitochondrial Dysfunction Reveals Heterogeneity of Lung Endothelial Cells and Novel Targets in Pulmonary Hypertension
IntroductionPulmonary hypertension (PH) is a complex, lethal vascular disease and currently has very limited treatment options with no cure. Severe pulmonary vascular remodeling and right ventricular (RV) hypertrophy in PH ultimately lead to RV failure. Endothelial dysfunction (ED) is demonstrated to play a key role in the initiation of PH. However, the pathogenic mechanisms leading up to ED remain unclear.HypothesisWe hypothesized that mitochondrial dysfunction (MD) in endothelial cells (EC) would produce a specific gene expression pattern in each EC subpopulation, revealing pathogenic pathways that trigger ED.MethodsRats with the NFU1G206C mutation spontaneously develop PH, recapitulating the human disease in patients with multiple mitochondrial dysfunctions syndrome and PH. Transcriptomics was performed with the 10X Genomics kit on isolated single cell EC’s from WT and NFU1G206C rats. EC clustering was done with the Seurat V4 R package. The Database for Annotation, Visualization and Integrated Discovery (DAVID) identified enriched biological pathways. RV function was determined by echocardiography imaging (Vevo 3100 system).ResultsEcho results confirmed that NFU1G206C rats showed a spontaneous PH phenotype. Thirteen distinctive subpopulations of EC’s were identified in WT and NFU1G206C rats with UMAP and tSNE analysis, based on specific marker expressions such as alveolar capillary ECs (expressing ca4), small capillary ECs (fabp4), lymphatic ECs (prox1) and ECs regulating arteriogenesis (gja5) to ECs undergoing endothelial mesenchymal transition (EndMT) (acta2, encoding for α‐SMA). DAVID analysis of genes expressed in individual EC clusters showed heterogenous functions such as cell adhesion, inflammatory response, migration, and angiogenesis, highlighting the physiological relevance of EC’s. Cells were then classified as either senescent, quiescent, or proliferative, based on genes enriched in the respective pathways. We found that EC clusters of NFU1G206C rats significantly deviated from conventional gene expression profiles of WT clusters. The cluster1 of NFU1G206C rats showed an increase in senescence marker, lamb1 and decreased mki67. On the other hand, genes associated with proliferation were significantly increased in cluster2. We also identified EC’s with increased association of EndMT genes in cluster7. Most remarkably, in clusters 3, 5 and 9 of the NFU1G206C rats, we discovered a significant decrease in genes controlling cell adhesion and junction proteins, which could potentiate EC barrier dysfunction, an important contributor to PH pathobiology. These global aberrations from conventional EC functions could initiate pathobiological transformation.ConclusionWe demonstrate that EC functions are diverse and crucial for normal vascular function and maintenance. We also highlight that MD can shift the EC’s from their native to pathological states. Therefore, treatment approaches that attenuate MD or targets the specific changes leading up to ED would effectively control PH.
- # Endothelial Cells
- # Endothelial Cells Clusters
- # Multiple Mitochondrial Dysfunctions Syndrome
- # Right Ventricular
- # Pulmonary Hypertension
- # Alveolar Capillary Endothelial Cells
- # Endothelial Mesenchymal Transition
- # Database For Annotation, Visualization And Integrated Discovery
- # WT Rats
- # Lymphatic Endothelial Cells
- Peer Review Report
- 10.7554/elife.80900.sa1
- Sep 30, 2022
Decision letter: Single-cell transcriptomic atlas of lung microvascular regeneration after targeted endothelial cell ablation
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14
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Right ventricular (RV) function is the predominant determinant of survival in patients with pulmonary arterial hypertension (PAH). In preclinical models, pharmacological activation of BMP (bone morphogenetic protein) signaling with FK506 (tacrolimus) improved RV function by decreasing RV afterload. FK506 therapy further stabilized three patients with end-stage PAH. Whether FK506 has direct effects on the pressure-overloaded right ventricle is yet unknown. We hypothesized that increasing cardiac BMP signaling with FK506 improves RV structure and function in a model of fixed RV afterload after pulmonary artery banding (PAB). Direct cardiac effects of FK506 on the microvasculature and RV fibrosis were studied after surgical PAB in wild-type and heterozygous Bmpr2 mutant mice. RV function and strain were assessed longitudinally via cardiac magnetic resonance imaging during continuous FK506 infusion. Genetic lineage tracing of endothelial cells (ECs) was performed to assess the contribution of ECs to fibrosis. Molecular mechanistic studies were performed in human cardiac fibroblasts and ECs. In mice, low BMP signaling in the right ventricle exaggerated PAB-induced RV fibrosis. FK506 therapy restored cardiac BMP signaling, reduced RV fibrosis in a BMP-dependent manner independent from its immunosuppressive effect, preserved RV capillarization, and improved RV function and strain over the time course of disease. Endothelial mesenchymal transition was a rare event and did not significantly contribute to cardiac fibrosis after PAB. Mechanistically, FK506 required ALK1 in human cardiac fibroblasts as a BMPR2 co-receptor to reduce TGFβ1-induced proliferation and collagen production. Our study demonstrates that increasing cardiac BMP signaling with FK506 improves RV structure and function independent from its previously described beneficial effects on pulmonary vascular remodeling.
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Pulmonary arterial hypertension (PAH) is a syndrome in which pulmonary arterial obstruction increases pulmonary vascular resistance, which leads to right ventricular (RV) failure and a 15% annual mortality rate. The present review highlights recent advances in the basic science of PAH. New concepts clarify the nature of PAH and provide molecular blueprints that explain how PAH is initiated and maintained. Five basic science concepts provide a framework to understand and treat PAH: (1) Endothelial dysfunction creates an imbalance that favors vasoconstriction, thrombosis, and mitogenesis. Restoration of this balance by inhibition of endothelin and thromboxane or augmentation of nitric oxide (NO) and prostacyclin is the paradigm on which most current therapy is based. (2) PAH has a genetic component. Mutations (bone morphogenetic protein receptor-2 [BMPR2]) and single-nucleotide polymorphisms (SNPs; ion channels and transporter genes) predispose to PAH. (3) Excess proliferation, impaired apoptosis, and glycolytic metabolism in pulmonary artery smooth muscle, fibroblasts, and endothelial cells suggest analogies to cancer. Many experimental therapies reduce PAH by decreasing the proliferation/apoptosis ratio; these include inhibitors of pyruvate dehydrogenase kinase (PDK), serotonin transporters (SERT), survivin, 3-hydroxy-3-methylglutaryl coenzyme A reductase, transcription factors (hypoxia-inducible factor [HIF]-1α and nuclear factor of activated T lymphocytes [NFAT]), and tyrosine kinases. Augmentation of voltage-gated K+ channels (Kv1.5) and BMPR2 signaling also addresses this imbalance. Tyrosine kinase inhibitors used to treat cancer are currently in phase 1 PAH trials. (4) Refractory vasoconstriction may occur due to rho kinase activation. Fewer than 20% of PAH patients respond to conventional vasodilators; however, refractory vasoconstriction may respond to rho kinase inhibitors. (5) The RV can be targeted therapeutically. Although increased afterload initiates RV failure, which is the major cause of death/dysfunction in PAH, the RV may be amenable to cardiac-targeted therapies. The RV in PAH has features of ischemic, hibernating myocardium. Guided by these new …
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