SimH: A Novel Representation Learning Model With Activation and Projection Mechanisms for COVID-19 Knowledge Bases.

Abstract

The emergence of coronavirus disease 2019 (COVID-19) has had a significant impact on healthcare and the economy. With representation learning applied in constructing COVID-19 knowledge graphs, abundant COVID-19-related knowledge collected by clinicians and scientists all over the world can be utilized to deepen their understanding of the mechanism and related biological functions of the disease. However, most existing representation learning models cannot deal well with COVID-19 knowledge graph due to its low-connected star-like structure and various complex nonlinear relationships. Besides, lacking reliable negative triplets is also a difficult problem, yet to be adequately resolved. In this article, we propose a novel representation learning model called translation on hyperplanes with an activation operation and similar semantic sampling (SimH) for COVID-19 knowledge graphs. In our proposed SimH, an activation operation is designed to provide additional interaction features for low-in-degree entities. Then the hyperplane projection technique is introduced to the distance-based scoring function so that those complex nonlinear relationships can be modeled with lower complexity maintained in comparison with other nonlinear models. Moreover, a negative triplet sampling method that adaptively replaces entities with similar semantics is introduced to generate reliable negative triplets. To verify the effectiveness of SimH, extensive experiments are conducted on the COVID-19-Concepts dataset. The experimental results show that our SimH model achieves significant improvements in prediction and classification accuracy over existing knowledge representation learning models.