Siamese network to assess scanner-related contrast variability in MRI

Abstract

Magnetic Resonance Imaging (MRI) stands as a noninvasive tool for diagnosing and monitoring various diseases. The flexibility of MRI configuration parameters allows for adaptable imaging sequences, and at the same time poses challenges in terms of reproducibility, as variability in imaging sequences leads to significant differences in image contrast. This is one of the major causes that compromise the reliability of deep learning methods. Since the majority of the literature is focused on documenting the effects of this issue rather than delving into its underlying causes, this work follows a different approach. A Siamese Neural Network (SNN) has been trained to identify the scanner that acquired the input image. Experimental results include the use of Euclidean Distance (ED) and machine learning algorithms trained and tested using the feature vectors generated with the SNN. The results have shown that the proposed method is capable of distinguishing the scanner used for the acquisition with high accuracy. For a comprehensive interpretation of the results, the feature vectors have been dimensionality reduced and visualized with a 3D plot. Finally, the proposed method is sensitive to MR image contrast variability and could be used to detect data-related inconsistencies and provide a mechanism to make users aware of potential issues.