Abstract
SummaryShinySOM offers a user-friendly interface for reproducible, high-throughput analysis of high-dimensional flow and mass cytometry data guided by self-organizing maps. The software implements a FlowSOM-style workflow, with improvements in performance, visualizations and data dissection possibilities. The outputs of the analysis include precise statistical information about the dissected samples, and R-compatible metadata useful for the batch processing of large sample volumes.Availability and implementationShinySOM is free and open-source, available online at gitlab.com/exaexa/ShinySOM.Supplementary information Supplementary data are available at Bioinformatics online.
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