Abstract

Incidence, molecular presentation and outcome of acute myeloid leukaemia (AML) are influenced by sex, but little attention has been directed at untangling sex‐related molecular and phenotypic differences between female and male patients. While increased incidence and poor risk are generally associated with a male phenotype, the poor prognostic FLT3 internal tandem duplication (FLT3‐ITD) mutation and co‐mutations with NPM1 and DNMT3A are overrepresented in female AML. Here, we have investigated the relationship between sex and FLT3‐ITD mutation status by comparing clinical data, mutational profiles, gene expression and ex vivo drug sensitivity in four cohorts: Beat AML, LAML‐TCGA and two independent HOVON/SAKK cohorts, comprising 1755 AML patients in total. We found prevalent sex‐associated molecular differences. Co‐occurrence of FLT3‐ITD, NPM1 and DNMT3A mutations was overrepresented in females, while males with FLT3‐ITDs were characterized by additional mutations in RNA splicing and epigenetic modifier genes. We observed diverging expression of multiple leukaemia‐associated genes as well as discrepant ex vivo drug responses, suggestive of discrete functional properties. Importantly, significant prognostication was observed only in female FLT3‐ITD‐mutated AML. Thus, we suggest optimization of FLT3‐ITD mutation status as a clinical tool in a sex‐adjusted manner and hypothesize that prognostication, prediction and development of therapeutic strategies in AML could be improved by including sex‐specific considerations.

Highlights

  • Sex influences regulatory mechanisms of the haematopoietic system as well as innate and adaptive immune responses [1,2]

  • Subtracting genes differentially expressed in the FMS-like tyrosine kinase 3 (FLT3)-internal tandem duplication (ITD)-negative group, we identified a total of 17 mRNA transcripts mapped to 16 genes, of which GLI2, CCL1, JPH1, MDGA1, RASGRF1, AE000661.37, HOXB-AS3, IRX5, NETO1/RP11713C5.1, UGT3A2, SIGLEC6 and MKRN3 were all significantly higher expressed in FLT3-ITD-positive females, while GPR126, SCRN1, HMGA2 and FAT1 were significantly higher expressed in FLT3-ITDpositive males (Fig. 2B; Figs S8 and S9)

  • Comparing FLT3-ITD-positive (n = 98) and FLT3-ITD-negative specimens (n = 282) irrespective of sex, we found that GLI2, CCL1, JPH1, MDGA1, RASGRF1, AE000661.37, HOXB-AS3, IRX5 and RP11-713C5.1 were all significantly upregulated in FLT3-ITDpositive acute myeloid leukaemia (AML), while GPR126 was significantly downregulated

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Summary

Introduction

Sex influences regulatory mechanisms of the haematopoietic system as well as innate and adaptive immune responses [1,2]. Androgens have been used to treat various bone marrow (BM) failure syndromes since the 1960s [6], and the presence of hormone receptors on haematopoietic cells, including malignant cell populations, has been recognized for decades [7]. Little is Abbreviations AML, acute myeloid leukaemia; AR, allelic ratio; AUC, area under the curve; BM, bone marrow; CE, capillary electrophoresis; DGE, differential gene expression; FLT3, Fms-like tyrosine kinase 3; ITD, internal tandem duplication; MDS, myelodysplastic syndrome; NGS, next-generation sequencing; VAF, variant allele frequency. Molecular Oncology 15 (2021) 2285–2299 a 2021 The Authors.

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