Abstract

Phenotypic plasticity enables a single genotype to produce multiple phenotypes in response to environmental variation. Plasticity may play a critical role in the colonization of novel environments, but its role in adaptive evolution is controversial. Here we suggest that rapid parallel regulatory adaptation of Anolis lizards to urban heat islands is due primarily to selection for reduced and/or reversed heat-induced plasticity that is maladaptive in urban thermal conditions. We identify evidence for polygenic selection across genes of the skeletal muscle transcriptome associated with heat tolerance. Forest lizards raised in common garden conditions exhibit heat-induced changes in expression of these genes that largely correlate with decreased heat tolerance, consistent with maladaptive regulatory response to high-temperature environments. In contrast, urban lizards display reduced gene expression plasticity after heat challenge in common garden and a significant increase in gene expression change that is congruent with greater heat tolerance, a putatively adaptive state in warmer urban environments. Genes displaying maladaptive heat-induced plasticity repeatedly show greater genetic divergence between urban and forest habitats than those displaying adaptive plasticity. These results highlight the role of selection against maladaptive regulatory plasticity during rapid adaptive modification of complex systems in the wild.

Highlights

  • CTmax *Mayaguez Linkage DisequilibriumSan Juan Linkage Disequilibrium power within each regulatory category

  • Skeletal muscle transcriptomes were collected for RNA sequencing (RNAseq) analyses

  • We identified 2,161,083 single-nucleotide polymorphisms (SNPs) transcriptome-wide using RNAseq reads from lineages originating in all four municipalities studied in Campbell-Staton et al.[60] (Aguadilla: forest n = 11, urban n = 16; Arecibo: forest n = 18, urban n = 16; Mayagüez: forest n = 19, urban n = 18; San Juan: forest n = 11, urban n = 21)

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Summary

Introduction

CTmax *Mayaguez Linkage DisequilibriumSan Juan Linkage Disequilibrium power within each regulatory category. The correlation between the wild-caught and common garden data sets remained significant in each case (positive regulators: R2: 0.04, p < 0.0002; negative regulators R2: 0.03, p = 0.0003). To directly assess evolutionary contributions to expression variation in these candidate genes, we searched for genomic signatures of selection in each population using all individuals (wild-caught = 114, common garden = 16). If the plasticity producing observed differences in thermal tolerance in the wild are the target of selection in urban habitats, we would expect to see significant signatures of selection at the sequence level specific to our candidate loci. Using all polymorphic loci within candidate genes as the focal candidate SNP set, we tested for significant deviations from neutrality by direct comparison with the null expectation estimated by background variation[69] across all SNPs within genes that had no significant association with CTMAX (Fig. 4)

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