Seasonal dynamics of the pink root fungus (Setophoma terrestris) in rhizosphere soil: Effect of crop species and rotation

Abstract

AbstractSetophoma terrestris, a ubiquitous inhabitant of soil, causes pink root rot in various crops. In the present study, the density of S. terrestris was estimated by quantitative real‐time PCR in onion and non‐onion fields of Hokkaido, the northernmost island of Japan. Three‐year observations in monoculture and rotation fields demonstrated that the fungus grew significantly from the third year onwards, and declined in fields planted with poor hosts (e.g., sugar beet and soybean) that produced few or no chlamydospores of S. terrestris. Seasonal analysis revealed that the population of S. terrestris consistently increased when the tops of onions fell over in summer, which is when root activity declines. However, the soil inoculum potential estimated by a seedling bioassay showed distinct seasonal patterns, which rose from post‐harvest in winter and remained high until the subsequent planting in spring. Detailed surveys on depth distribution in an onion field detected a high population of S. terrestris in the effective layer (10–30 cm deep) but not below the hardpan (40 cm), implying that the fungus is intimately associated with roots. These results indicate that the proliferation of the fungus is closely related to root senescence and that over‐wintered propagules play an important role in primary infections, affecting disease severity. The present study shows that the temporal dynamics of S. terrestris depend exclusively on the activity of infecting roots and provides circumstantial evidence on the deleterious impact of monoculture on crop production.