Abstract

Solution-state distance restraints for protein structure determination with Ångström-level resolution rely on through-space transfer of magnetization between nuclear spins. Such magnetization transfers, named Overhauser effects, occur via dipolar magnetic couplings. We demonstrate improvements in magnetization transfer using long-lived coherences (LLCs)—singlet-triplet superpositions that are antisymmetric with respect to spin-permutation within pairs of coupled magnetic nuclei—as the magnetization source. Magnetization transfers in the presence of radio-frequency irradiation, known as ‘rotating-frame’ Overhauser effects (ROEs), are predicted by theory to improve by the use of LLCs; calculations are matched by preliminary experiments herein. The LLC-ROE transfers were compared to the transmission of magnetization via classical transverse routes. Long-lived coherences accumulate magnetization on an external third proton, K, with transfer rates that depended on the tumbling regime. I,S →K transfers in the LLC configuration for (I,S) are anticipated to match, and then overcome, the same transfer rates in the classical configuration as the molecular rotational correlation times increase. Experimentally, we measured the LLC-ROE transfer in dipeptide AlaGly between aliphatic protons in different residues K = Ala − Hα and (I,S) = Gly − Hα1,2 over a distance dK,I,S = 2.3 Å. Based on spin dynamics calculations, we anticipate that, for such distances, a superior transfer of magnetization occurs using LLC-ROE compared to classical ROE at correlation times above τC=10 ns. The LLC-ROE effect shows potential for improving structural studies of large proteins and offering constraints of increased precision for high-affinity protein-ligand complexes in slow tumbling in the liquid state.

Highlights

  • Structure determination for proteins using liquid-state NMR was first demonstrated in the 1980s [1]

  • 10 kDa in size, considered ‘small’ by solution-state high-resolution analysis standards, the set consists of experiments rendered famous under the acronyms: COSY [2], TOCSY [3], NOESY [1] or ROESY [4]

  • The cornerstone of structure determination are the distance restraints derived from NOESY and ROESY experiments, in their two- or three-dimensional avatars

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Summary

Introduction

Structure determination for proteins using liquid-state NMR was first demonstrated in the 1980s [1]. Sets of experiments were developed to tackle proteins of various sizes. 10 kDa in size, considered ‘small’ by solution-state high-resolution analysis standards, the set consists of experiments rendered famous under the acronyms: COSY [2], TOCSY [3], NOESY [1] or ROESY [4]. The cornerstone of structure determination are the distance restraints derived from NOESY and ROESY experiments, in their two- or three-dimensional avatars. The transfer of magnetization between spins (A,X) in these NMR experiments is mediated by magnetic interactions. Magnetic interactions suitable for magnetization transfer occur as scalar couplings, via JAX -coupling constants, or dipolar–dipolar interactions, governed μ γ A γX h 1 by dipolar coupling constants b AX = 0 8π

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