Abstract

Precise temporal and spatial regulation of gene expression in the brain is a prerequisite for cognitive processes such as learning and memory. Epigenetic mechanisms that modulate the chromatin structure have emerged as important regulators in this context. While posttranslational modification of histones or the modification of DNA bases have been examined in detail in many studies, the role of ATP-dependent chromatin remodeling factors (ChRFs) in learning- and memory-associated gene regulation has largely remained obscure. Here we present data that implicate the highly conserved chromatin assembly and remodeling factor Chd1 in memory formation and the control of immediate early gene (IEG) response in the hippocampus. We used various paradigms to assess short-and long-term memory in mice bearing a mutated Chd1 gene that gives rise to an N-terminally truncated protein. Our data demonstrate that the Chd1 mutation negatively affects long-term object recognition and short- and long-term spatial memory. We found that Chd1 regulates hippocampal expression of the IEG early growth response 1 (Egr1) and activity-regulated cytoskeleton-associated (Arc) but not cFos and brain derived neurotrophic factor (Bdnf), because the Chd1-mutation led to dysregulation of Egr1 and Arc expression in naive mice and in mice analyzed at different stages of object location memory (OLM) testing. Of note, Chd1 likely regulates Egr1 in a direct manner, because chromatin immunoprecipitation (ChIP) assays revealed enrichment of Chd1 upon stimulation at the Egr1 genomic locus in the hippocampus and in cultured cells. Together these data support a role for Chd1 as a critical regulator of molecular mechanisms governing memory-related processes, and they show that this function involves the N-terminal serine-rich region of the protein.

Highlights

  • Eukaryotic chromatin, which consists of nuclear DNA complexed with the conserved histone proteins H2A, H2B, H3, H4 and H1 as well as many additional architectural proteins, is a highly dynamic structure that changes in response to external and internal cues as well as during developmental and differentiation-related processes

  • Using a series of tests for object recognition and spatial memory, analysis of expression profiles of several critical immediate early genes (IEG) and chromatin immunoprecipitation (ChIP), we discovered that Chromodomain-helicase-DNA binding protein 1 (Chd1) is important in particular for spatial memory formation, which correlates with transcriptional dysregulation of the IEGs early growth response 1 (Egr1) and activity-regulated cytoskeleton-associated (Arc) in Chd1-mutant hippocampi suggesting that the N-terminal serine-rich domain of Chd1 is necessary for the transcription-regulatory properties of Chd1 in this context

  • The performance of Chd1∆2/∆2 mice in visual cliff and light/dark tests was indistinguishable from Chd1flox/flox control animals (Figures 1A,B) indicating that vision is not impaired by the N-terminal truncation of Chd1

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Summary

Introduction

Eukaryotic chromatin, which consists of nuclear DNA complexed with the conserved histone proteins H2A, H2B, H3, H4 and H1 as well as many additional architectural proteins, is a highly dynamic structure that changes in response to external and internal cues as well as during developmental and differentiation-related processes. Establishment and maintenance of a certain transcriptional activity state is typically achieved by a close cooperation between transcription factors and cofactors with the machinery that modulates chromatin structure including ChRFs, histone- and DNA-modifying activities. The importance of these epigenetic regulatory mechanisms for cognitive processes has been increasingly recognized in recent years (Sweatt, 2013; Rudenko and Tsai, 2014; López and Wood, 2015; Grigorenko et al, 2016; Iwase et al, 2017; Schmauss, 2017; Gallegos et al, 2018; Wood, 2018)

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