Abstract

The highly robust control of cell cycles in eukaryotes enables cells to undergo strictly ordered G1/S/G2/M phases and respond adaptively to regulatory signals; however the nature of the robustness remains obscure. Specifically, it is unclear whether events of signaling should be strictly ordered and whether some events are more robust than others. To quantitatively address the two questions, we have developed a novel cell cycle model upon experimental observations. It contains positive and negative E2F proteins and two Cdk inhibitors, and is parameterized, for the first time, to generate not only oscillating protein concentrations but also periodic signaling events. Events and their orders reconstructed under varied conditions indicate that proteolysis of cyclins and Cdk complexes by APC and Skp2 occurs highly robustly in a strict order, but many other events are either dispensable or can occur in flexible orders. These results suggest that strictly ordered proteolytic events are essential for irreversible cell cycle progression and the robustness of cell cycles copes with flexible orders of signaling events, and unveil a new and important dimension to the robustness of cell cycle control in particular and to biological signaling in general.

Highlights

  • While it is well accepted that the control mechanisms in cells share common features[10], these studies led to different hypotheses, especially the clock and domino hypotheses[11], to explain strictly ordered G1/S/G2/M phases, and there are points arguing for and against the importance of regulated proteolysis of cyclins and CDKs12–14

  • Simulations focus on the distinct roles of Dap, Rux, E2F1, E2F2, Stg, and Wee in cell cycle control and generate results indicating that the E2F1-centered long-range feedback can regulate G1/S and G2/M phase compensation

  • Handle of the negative E2F protein E2F2 (E2F4 in mammals), which has been ignored in all previous models, is based on that E2F4 needs p27/p130 to co-locate to E2F-responsive promoters of target genes, which include B-myb, CycA, Cdk[1], and E2F132,33

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Summary

Introduction

While it is well accepted that the control mechanisms in cells share common features[10], these studies led to different hypotheses, especially the clock and domino hypotheses[11], to explain strictly ordered G1/S/G2/M phases, and there are points arguing for and against the importance of regulated proteolysis of cyclins and CDKs12–14. While it is known the four phases are strictly ordered, it remains unclear to what extent signaling events should be ordered. Our results indicate that flexible lengths of cell cycle phases and flexible orders of signaling events are intrinsically associated and are key features of robust cell cycle control

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