Abstract

Killer cell Ig–like receptors (KIRs) on NK cells have been linked to a wide spectrum of health conditions such as chronic infections, autoimmune diseases, pregnancy complications, cancers, and transplant failures. A small subset of effector memory T cells also expresses KIRs. In this study, we use modern analytic tools including genome-wide and multiplex molecular, phenotypic, and functional assays to characterize the KIR<sup>+</sup> T cells in human blood. We find that KIR<sup>+</sup> T cells primarily reside in the CD56<sup>+</sup> T population that is distinctively DNAM-1<sup>high</sup> with a genome-wide quiescent transcriptome, short telomere, and limited TCR excision circles. During CMV reactivation in bone marrow transplant recipients, KIR<sup>+</sup>CD56<sup>+</sup> T cells rapidly expanded in real-time but not KIR<sup>+</sup>CD56<sup>−</sup> T cells or KIR<sup>+</sup> NK cells. In CMV<sup>+</sup> asymptomatic donors, as much as 50% of CD56<sup>+</sup> T cells are KIR<sup>+</sup>, and most are distinguishably KIR2DL2/3<sup>+</sup>NKG2C<sup>+</sup>CD57<sup>+</sup>. Functionally, the KIR<sup>+</sup>CD56<sup>+</sup> T cell subset lyses cancer cells and CMVpp65-pulsed target cells in a dual KIR-dependent and TCR-dependent manner. Analysis of metabolic transcriptome confirms the immunological memory status of KIR<sup>+</sup>CD56<sup>+</sup> T cells in contrast to KIR<sup>−</sup>CD56<sup>+</sup> T cells that are more active in energy metabolism and effector differentiation. KIR<sup>–</sup>CD56<sup>+</sup> T cells have &gt;25-fold higher level of expression of RORC than the KIR<sup>+</sup> counterpart and are a previously unknown producer of IL-13 rather than IL-17 in multiplex cytokine arrays. Our data provide fundamental insights into KIR<sup>+</sup> T cells biologically and clinically.

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