Abstract
Recent advances in Cryo-EM led to a surge of ribosome structures deposited over the past five years in the PDB, including structures from different species, conformational states, or bound with different ligands. Yet, multiple conflicts make the identification and comparison of structures and ortholog components challenging. We present RiboXYZ (available at https://ribosome.xyz), a database that provides organized access to ribosome structures, with several tools for visualisation and study. The database is up-to-date with the worldwide Protein Data Bank (PDB), with a standardized nomenclature that allows for search and comparison across all the available structures.
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