Ribosomal quality control in repeat‐associated non‐AUG translation of GC rich repeats

Abstract

Nucleotide repeat expansions cause multiple neurodegenerative disorders including C9orf72‐associated amyotrophic lateral sclerosis and frontotemporal dementia (C9 ALS/FTD) and Fragile X‐associated tremor/ataxia syndrome (FXTAS). C9 ALS/FTD results from a GGGGCC (G4C2) hexanucleotide repeat expansions within an intron of C9orf72while FXTAS is caused by CGG repeat expansions in the 5’UTR of FMR1. These repeat‐containing RNAs elicit toxicity at least in part by triggering repeat‐associated non‐AUG (RAN) translation, a non‐canonical initiation process that generates toxic proteins from GC rich repeats. As repetitive RNA elements form strong RNA secondary structures might impact translational elongation, we explored the impact of ribosome‐associated quality control (RQC) pathways on RAN translation. RQC rescues stalled ribosomes and prevents translation of aberrant transcripts, with specific roles for both the mammalian nuclear export mediator factor (NEMF, homologous of Rqc2 in yeast) and the E3 ubiquitin ligase Listerin. Here we show that depletion of NEMF markedly increases the production of RAN products from both G4C2 and CGG repeats. This effect appears to be mediated post transcriptionally and does not involve the nuclear‐cytoplasmic transport functions of the protein. Ongoing studies are characterizing how loss of Listerin impacts RAN translation and repeat RNA stability while exploring whether NEMF meditated CAT‐tailing of RAN translation products impacts their turnover and toxicity.