Abstract

ABSTRACTThe study of aflatoxin in Aspergillus spp. has garnered the attention of many researchers due to aflatoxin’s carcinogenic properties and frequency as a food and feed contaminant. Significant progress has been made by utilizing the model organism Aspergillus nidulans to characterize the regulation of sterigmatocystin (ST), the penultimate precursor of aflatoxin. A previous forward genetic screen identified 23 A. nidulans mutants involved in regulating ST production. Six mutants were characterized from this screen using classical mapping (five mutations in mcsA) and complementation with a cosmid library (one mutation in laeA). The remaining mutants were backcrossed and sequenced using Illumina and Ion Torrent sequencing platforms. All but one mutant contained one or more sequence variants in predicted open reading frames. Deletion of these genes resulted in identification of mutant alleles responsible for the loss of ST production in 12 of the 17 remaining mutants. Eight of these mutations were in genes already known to affect ST synthesis (laeA, mcsA, fluG, and stcA), while the remaining four mutations (in laeB, sntB, and hamI) were in previously uncharacterized genes not known to be involved in ST production. Deletion of laeB, sntB, and hamI in A. flavus results in loss of aflatoxin production, confirming that these regulators are conserved in the aflatoxigenic aspergilli. This report highlights the multifaceted regulatory mechanisms governing secondary metabolism in Aspergillus. Additionally, these data contribute to the increasing number of studies showing that forward genetic screens of fungi coupled with whole-genome resequencing is a robust and cost-effective technique.

Highlights

  • IMPORTANCE In a postgenomic world, reverse genetic approaches have displaced their forward genetic counterparts

  • The current work was pursued to identify alleles involved in regulation of secondary metabolism and to demonstrate a return to forward genetics to track phenotypes and to discover genetic pathways that could not be predicted through a reverse genetics approach

  • One major challenge in using whole-genome sequencing data to find a mutation causing the phenotype of interest is the presence of variants that do not influence that phenotype

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Summary

Introduction

IMPORTANCE In a postgenomic world, reverse genetic approaches have displaced their forward genetic counterparts. The current work was pursued to identify alleles involved in regulation of secondary metabolism and to demonstrate a return to forward genetics to track phenotypes and to discover genetic pathways that could not be predicted through a reverse genetics approach. To identify regulators of the ST BGC in A. nidulans, a forward genetic screen was designed to identify mutants deficient in ST production resulting from mutations located outside the gene cluster [14]. This was achieved by chemical mutagenesis of an A. nidulans ⌬stcE strain which accumulates the first stable ST/aflatoxin intermediate, norsolorinic acid (NOR). Subsequent classical genetic approaches (chromosomal mapping and cosmid library complementation) identified two genes from this original work, mcsA and laeA, respectively [15, 16]

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