RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayes

Abstract

AbstractStatistical phylogenetic methods are the foundation for a wide range of evolutionary and epidemiological studies. However, as these methods grow increasingly complex, users often encounter significant challenges with summarizing, visualizing and communicating their key results.We presentRevGadgets, anRpackage for creating publication‐quality figures from the results of a large variety of phylogenetic analyses performed inRevBayes(and other phylogenetic software packages).We demonstrate how to useRevGadgetsthrough a set of vignettes that cover the most common use cases that researchers will encounter.RevGadgetsis an open‐source, extensible package that will continue to evolve in parallel withRevBayes, helping researchers to make sense of and communicate the results of a diverse array of analyses.