Retrieval of crop biophysical-biochemical variables from airborne AVIRIS-NG data using hybrid inversion of PROSAIL-D

Abstract

Sustainable agricultural growth and management reduces over-utilization of farm resources and squeezes risk of negative impacts on environment. Monitoring continuous crop growth and health under various conditions at different spatio-temporal resolutions is a key to assess yield stability, crop diversity, adaptability, mitigation for stress and response. The quantification of crop biophysical and biochemical variables spatially from remotely sensed data with help of spectroscopic methods provide a reliable discerning information in the context of crop foliar condition like leaf greenness, senescence, canopy density, crop growth, stress and eco-physiological processes. Airborne Visible/Infrared Imaging Spectrometer-Next Generation (AVIRIS-NG) airborne hyperspectral data offers high spatial and spectral resolution giving a unique advantage and opportunity to test retrievals of crop biophysical (BP)-biochemical (BC) variables under varying conditions over different types of crops. A hybrid inversion of leaf-canopy Radiative Transfer model – PROSAIL-D complemented with use of data driven nonlinear non-parametric methods which offer simplicity, fastness, reliability and competency is a powerful method to retrieve crop biophysical and biochemical variables. The Hyperspectral band (feature) selection is a computationally cost efficient method to overcome data redundancy in high dimensional correlated input spectral bands. The determination of optimum subset or combination of hyperspectral bands specific to retrieval of vegetation properties (including canopy effects) determined using feature selection algorithm for regression-based retrievals are active research topic unlike classification problems in which it is more common. A band selection algorithm based on Gaussian Processes Regression was used to choose most sensitive bands from in-situ biophysical-biochemical measurements and crop spectral signatures collected for analysis in two different agricultural regions: Raichur (Karnataka) and Anand (Gujarat) districts of India representing diverse landscapes, heterogeneous crop canopies and agro climatic settings. The retrieval algorithm for AVIRIS-NG image employed a decision tree ensemble algorithm Canonical Correlation Forests using the optimum subset of bands for retrieval of targeted crop variable. Validation of retrieved crop variables were done using in-situ ground observations collected over heterogeneous diverse crop landscape. The results showed chlorophyll (RMSE = 6.61 µg cm−2), equivalent water thickness (RMSE = 0.002 cm), leaf area index (RMSE = 0.35 m2/m−2) and dry matter (RMSE = 0.003 g cm−2), carotenoid (RMSE = 14.3 µg cm−2), anthocyanin (RMSE = 12.92 µg cm−2) retrieved with better accuracies. The results obtained in context of feature (band) selection approach for Radiative Transfer model inversion show overlapping of sensitive spectral bands of chlorophyll-ab, carotenoid and anthocyanin especially between narrow spectral range 480 to 560 nm as predominant reason for decreased accuracies of anthocyanin and carotenoid compared to other variable. This poses a limitation as well as opportunity for further research in signal separation in context of feature selection approach especially in context of broader spectral bandwidths. It also sets ground for further development of feature selection algorithms that use hybrid regression methods customized for crop specific traits.