Response and Regulatory Network Analysis of Roots and Stems to Abiotic Stress in Populus trichocarpa

Abstract

Abiotic stress is one of the environmental conditions that effects plant survival and growth. As a vital model plant and papermaking raw material, it is very important to identify the differentially expressed genes of Populus trichocarpa Torr. & A.Gray ex Hook under abiotic stress in order to cultivate stress-tolerant plants. We analyzed the whole transcription spectrum and potential differentially expressed genes of 54 groups of roots and stem-xylem sequencing sample data under cold, drought, heat and salt stress for different durations. Gene Ontology (GO) enrichment analysis showed that molecular function played a stronger role in stems’ response to abiotic stress, and genes in roots could barely respond to both cold stress and heat stress. Degree and betweenness centrality were used to identify transcription factors. It was considered that intermediate centrality is more suitable to determine whether the transcription factor is a hub gene. DNA binding was the biggest enrichment, while transcription factors responded to the abiotic stress. The multipronged approach identified in the roots and stems provides a genetic basis for resistance and more targeted genetic improvement of Populus trichocarpa. The comparison of two centralities can more effectively analyze the importance of complex gene network nodes in plants under corresponding abiotic stresses.