Relaxation dynamics near nonequilibrium stationary states in Brownian ratchets

Abstract

A comprehensive study of the static and dynamical properties of a representative stochastic model of Brownian ratchet effects for molecular motors is reported. The model describes Brownian motions on two periodic potentials under static and time-dependent forces, where there are two distinct locations of chemical reactions coupling the levels with reversible rates within a period. Complete stationary properties have been obtained analytically for arbitrary potentials under external force. Dynamical relaxation properties near nonequilibrium stationary states were examined by considering the response function of velocity upon time-dependent external force, expressed in terms of the conditional probability density of the model. The latter is fully calculated using a systematic numerical method using matrix diagonalization, which is easily generalized to more complicated models for studying both static and dynamical properties. The behavior of the time-dependent response examined for model potentials suggests that the characteristic relaxation time near stationary states generally decreases linearly with respect to increasing velocity as one goes away from equilibrium via an increase in chemical potential of fuel species, a prediction testable in single molecule experiments.