Abstract

Multidrug resistance (MDR) in Gram-negative pathogens, such as the Enterobacteriaceae and Pseudomonas aeruginosa, poses a significant threat to our ability to effectively treat infections caused by these organisms. A major component in the development of the MDR phenotype in Gram-negative bacteria is overexpression of Resistance-Nodulation-Division (RND)-type efflux pumps, which actively pump antibacterial agents and biocides from the periplasm to the outside of the cell. Consequently, bacterial efflux pumps are an important target for developing novel antibacterial treatments. Potent efflux pump inhibitors (EPIs) could be used as adjunctive therapies that would increase the potency of existing antibiotics and decrease the emergence of MDR bacteria. Several potent inhibitors of RND-type efflux pump have been reported in the literature, and at least three of these EPI series were optimized in a pre-clinical development program. However, none of these compounds have been tested in the clinic. One of the major hurdles to the development of EPIs has been the lack of biochemical, computational, and structural methods that could be used to guide rational drug design. Here, we review recent reports that have advanced our understanding of the mechanism of action of several potent EPIs against RND-type pumps.

Highlights

  • The rise of multidrug resistant (MDR) Gram-negative pathogens poses a significant clinical problem

  • Elimination of RND pumps in Pseudomonas aeruginosa by genetic deletion (Lomovskaya et al, 1999) or inhibition with a potent efflux pump inhibitor (EPI; Lomovskaya et al, 2001) decreases the frequency of resistance to levofloxacin

  • These include the first crystal structure of an EPI bound to two RND pumps (Nakashima et al, 2013), the first report of EPI-resistant mutants that map to the binding site of AcrB (Schuster et al, 2014), and the application of molecular dynamic (MD) simulations to model the binding sites of other EPIs (Vargiu and Nikaido, 2012; Vargiu et al, 2014)

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Summary

Recent advances toward a molecular mechanism of efflux pump inhibition

Specialty section: This article was submitted to Antimicrobials, Resistance and Chemotherapy, a section of the journal Frontiers in Microbiology. Multidrug resistance (MDR) in Gram-negative pathogens, such as the Enterobacteriaceae and Pseudomonas aeruginosa, poses a significant threat to our ability to effectively treat infections caused by these organisms. A major component in the development of the MDR phenotype in Gram-negative bacteria is overexpression of Resistance-Nodulation-Division (RND)-type efflux pumps, which actively pump antibacterial agents and biocides from the periplasm to the outside of the cell. Several potent inhibitors of RND-type efflux pump have been reported in the literature, and at least three of these EPI series were optimized in a pre-clinical development program. None of these compounds have been tested in the clinic.

Introduction
Efflux pump inhibitor mechanism
Approaches to Study the Mechanism of Action of EPIs
Findings
Binding Assays
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