Abstract

BackgroundHuman-like H3N2 influenza viruses have repeatedly been transmitted to domestic pigs in different regions of the world, but it is still uncertain whether any of these variants could become established in pig populations. The fact that different subtypes of influenza viruses have been detected in pigs makes them an ideal candidate for the genesis of a possible reassortant virus with both human and avian origins. However, the determination of whether pigs can act as a “mixing vessel” for a possible future pandemic virus is still pending an answer. This prompted us to gather the epidemiological information and investigate the genetic evolution of swine influenza viruses in Jilin, China.MethodsNasopharyngeal swabs were collected from pigs with respiratory illness in Jilin province, China from July 2007 to October 2008. All samples were screened for influenza A viruses. Three H3N2 swine influenza virus isolates were analyzed genetically and phylogenetically.ResultsInfluenza surveillance of pigs in Jilin province, China revealed that H3N2 influenza viruses were regularly detected from domestic pigs during 2007 to 2008. Phylogenetic analysis revealed that two distinguishable groups of H3N2 influenza viruses were present in pigs: the wholly contemporary human-like H3N2 viruses (represented by the Moscow/10/99-like sublineage) and double-reassortant viruses containing genes from contemporary human H3N2 viruses and avian H5 viruses, both co-circulating in pig populations.ConclusionsThe present study reports for the first time the coexistence of wholly human-like H3N2 viruses and double-reassortant viruses that have emerged in pigs in Jilin, China. It provides updated information on the role of pigs in interspecies transmission and genetic reassortment of influenza viruses.

Highlights

  • The pig is considered to be an important host of influenza A viruses as it might be associated with the generation of human pandemic influenza strains [1]

  • HA1 amino acid analysis To investigate all of the detailed genetic characteristics, we compared the deduced amino acid sequences of the hemagglutinin 1 (HA1) gene from the three swine H3N2 isolates against the representatives of five lineages available in GenBank

  • The three H3N2 isolates showed a close relationship to HA1 genes from the contemporary human lineage with a sequence similarity of 94.8,97.6% to Moscow/10/ 99, while there was 80.9,87.2% similarity compared with the representatives of four other lineages (Dk/Hong Kong/7/75 (ABB88256.1), Sw/Italy/1461/96 (CAC40048.1), Hong Kong/1/ 68 (ACU79871.1), Port Chalmers/1/73 (AAC78096.1), and Victoria/3/75 (CAA24270.1))

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Summary

Introduction

The pig is considered to be an important host of influenza A viruses as it might be associated with the generation of human pandemic influenza strains [1]. The Sydney-like H3N2 variants from pigs in the U.S.A. in 1998 were double and triple reassortants containing viral genes of human, swine and avian origin [8]. This highlights the complex and dynamic influenza ecology in pig populations. The fact that different subtypes of influenza viruses have been detected in pigs makes them an ideal candidate for the genesis of a possible reassortant virus with both human and avian origins. The determination of whether pigs can act as a ‘‘mixing vessel’’ for a possible future pandemic virus is still pending an answer This prompted us to gather the epidemiological information and investigate the genetic evolution of swine influenza viruses in Jilin, China

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Conclusion
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