Abstract

Crystallization of recombinant proteins in living cells is an exciting new approach for structural biology that provides an alternative to the time-consuming optimization of protein purification and extensive crystal screening steps. Exploiting the potential of this approach requires a more detailed understanding of the cellular processes involved and versatile screening strategies for crystals in a cell culture. Particularly if the target protein forms crystalline structures of unknown morphology only in a small fraction of cells, their detection by applying standard visualization techniques can be time consuming and difficult owing to the environmental challenges imposed by the living cells. In this study, a high-brilliance and low-background bioSAXS beamline is employed for rapid and sensitive detection of protein microcrystals grown within insect cells. On the basis of the presence of Bragg peaks in the recorded small-angle X-ray scattering profiles, it is possible to assess within seconds whether a cell culture contains microcrystals, even in a small percentage of cells. Since such information cannot be obtained by other established detection methods in this time frame, this screening approach has the potential to overcome one of the bottlenecks of intracellular crystal detection. Moreover, the association of the Bragg peak positions in the scattering curves with the unit-cell composition of the protein crystals raises the possibility of investigating the impact of environmental conditions on the crystal structure of the intracellular protein crystals. This information provides valuable insights helping to further understand the in cellulo crystallization process.

Highlights

  • Nowadays, it is well established that living cells from all kingdoms of life possess an intrinsic ability to form intracellular protein crystals, denoted as ‘in vivo grown crystals’ or ‘in cellulo crystals’ (Schonherr et al, 2018)

  • Combining the high sensitivity of Small-angle X-ray scattering (SAXS) with X-ray powder diffraction (XRPD) analysis methods, we demonstrate that it is possible to assess within seconds whether a cell culture contains microcrystalline material based on the presence of Bragg peaks in the recorded scattering profiles, even for target proteins that form crystals only in a small percentage of cells

  • Three are known to crystallize in living insect cells infected by recombinant baculovirus (rBV), but they differ in crystallization efficiency, as well as in crystal volume and morphology

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Summary

Introduction

It is well established that living cells from all kingdoms of life possess an intrinsic ability to form intracellular protein crystals, denoted as ‘in vivo grown crystals’ or ‘in cellulo crystals’ (Schonherr et al, 2018). Highresolution structural information on several recombinant proteins has already been obtained from diffraction of in cellulo crystals, e.g. for the coral Dipsastraea favus derived fluorescent protein Xpa (Tsutsui et al, 2015), the metazoanspecific human kinase PAK4 in complex with Inka (Baskaran et al, 2015) and the BinAB larvicide from Lysinibacillus sphaericus (Colletier et al, 2016), as well as of cathepsin B (CatB; Redecke et al, 2013) and IMP dehydrogenase (IMPDH; Nass et al, 2020) from the parasite Trypanosoma brucei These results question the earlier opinion that the crowded environment in living cells might impact the order of the crystalline structure (Doye & Poon, 2006). Insights into the mechanisms that control the size and shape of crystals, and the identification of biological parameters suitable for screening approaches, could further widen the applications of in cellulo crystallization

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