Abstract

Telomerase-negative yeasts survive via one of the two Rad52-dependent recombination pathways, which have distinct genetic requirements. Although the telomere pattern of type I and type II survivors is well characterized, the mechanistic details of short telomere rearrangement into highly evolved pattern observed in survivors are still missing. Here, we analyze immediate events taking place at the abruptly shortened VII-L and native telomeres. We show that short telomeres engage in pairing with internal Rap1-bound TG1–3-like tracts present between subtelomeric X and Y′ elements, which is followed by BIR-mediated non-reciprocal translocation of Y′ element and terminal TG1–3 repeats from the donor end onto the shortened telomere. We found that choice of the Y′ donor was not random, since both engineered telomere VII-L and native VI-R acquired Y′ elements from partially overlapping sets of specific chromosome ends. Although short telomere repair was associated with transient delay in cell divisions, Y′ translocation on native telomeres did not require Mec1-dependent checkpoint. Furthermore, the homeologous pairing between the terminal TG1–3 repeats at VII-L and internal repeats on other chromosome ends was largely independent of Rad51, but instead it was facilitated by Rad59 that stimulates Rad52 strand annealing activity. Therefore, Y′ translocation events taking place during presenescence are genetically separable from Rad51-dependent Y′ amplification process that occurs later during type I survivor formation. We show that Rad59-facilitated Y′ translocations on X-only telomeres delay the onset of senescence while preparing ground for type I survivor formation.

Highlights

  • Telomeres are nucleoprotein structures found at the physical ends of chromosomes

  • Telomerase is reactivated in most human cancers, but some cancer cells employ alternative lengthening of telomeres (ALT) based on homologous recombination (HR) to escape senescence

  • We found that this telomere rearrangement depends on Rad52 strand annealing activity stimulated by Rad59, it is distinct from Rad51-dependent Y9 amplification process observed in type I survivors

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Summary

Introduction

Telomeres are nucleoprotein structures found at the physical ends of chromosomes. Their terminal location defines their two main functions: protection of the chromosome ends from illegitimate repair reactions and prevention of the loss of terminal DNA due to either degradation or incomplete replication [1]. The second function is mediated by Cdc bound to the single-stranded G-rich 39 overhang at the extreme terminus of a telomere. Telomeres in yeast cells with reduced telomerase activity progressively shorten with each cell division until they are recognized as DNA damage and recruit Mec kinase that initiates irreversible G2/M arrest [7,8,9]. Most of the cells die, but at low frequency survivors emerge, which maintain their telomeres via recombination [10,11], implying that homologous recombination (HR) can serve as a bypass pathway to sustain viability in the absence of telomerase

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