Quantum mechanical/effective fragment potential (QM/EFP) study of phosphate diester cleavage in aqueous solution

Abstract

We report a study of the P–O bond cleavage of the anion of 2,4-dinitrophenyl ethyl phosphate (2,4-DNPEP), promoted by methylamine. The aminolysis reaction was investigated in the gas phase and an aqueous environment using the hybrid quantum mechanical/effective fragment potential (QM/EFP) approach. According to the B3LYP/6-31++G(d,p) results, in the gas phase the cleavage of the P–O bond of 2,4-DNPEP proceeds in one step through a concerted mechanism, with an activation free energy of 39kcal/mol. Including solvent effects at the B3LYP/6-31++G(d,p)/EFP level changes the reaction to a two-step associative mechanism. The first step corresponds to the formation of the P–NHMe bond and the second step to concerted proton transfer and P–O(2,4-dinitrophenolate) cleavage. In the absence of any assistance of water molecules to promote the proton transfer, the second step is rate determining with an activation free energy for the breakdown of the intermediate of 21.8kcal/mol at the MP2/cc-pVTZ level and a free energy of activation of 32.3kcal/mol for the overall reaction. However, the proton transfer with the assistance of a water molecule may occur without significant energy barrier. The results show how solvent can play an important role in favoring an associative mechanism for the aminolysis of phosphate diesters, through the formation and stabilization of a pentacoordinate phosphorane intermediate.