Abstract
In marine sediments archaea often constitute a considerable part of the microbial community, of which the Deep Sea Archaeal Group (DSAG) is one of the most predominant. Despite their high abundance no members from this archaeal group have so far been characterized and thus their metabolism is unknown. Here we show that the relative abundance of DSAG marker genes can be correlated with geochemical parameters, allowing prediction of both the potential electron donors and acceptors of these organisms. We estimated the abundance of 16S rRNA genes from Archaea, Bacteria, and DSAG in 52 sediment horizons from two cores collected at the slow-spreading Arctic Mid-Ocean Ridge, using qPCR. The results indicate that members of the DSAG make up the entire archaeal population in certain horizons and constitute up to ~50% of the total microbial community. The quantitative data were correlated to 30 different geophysical and geochemical parameters obtained from the same sediment horizons. We observed a significant correlation between the relative abundance of DSAG 16S rRNA genes and the content of organic carbon (p < 0.0001). Further, significant co-variation with iron oxide, and dissolved iron and manganese (all p < 0.0000), indicated a direct or indirect link to iron and manganese cycling. Neither of these parameters correlated with the relative abundance of archaeal or bacterial 16S rRNA genes, nor did any other major electron donor or acceptor measured. Phylogenetic analysis of DSAG 16S rRNA gene sequences reveals three monophyletic lineages with no apparent habitat-specific distribution. In this study we support the hypothesis that members of the DSAG are tightly linked to the content of organic carbon and directly or indirectly involved in the cycling of iron and/or manganese compounds. Further, we provide a molecular tool to assess their abundance in environmental samples and enrichment cultures.
Highlights
Archaea are widely distributed around the globe and abundant in both the terrestrial and marine realms, where they display a remarkable diversity (Robertson et al, 2005; Schleper et al, 2005; Brochier-Armanet et al, 2011)
Deep Sea Archaeal Group (DSAG) are not restricted to the sulfate/methane transition zone and are found in environments that are sulfate limited, e.g., fresh water systems and sulfate depleted marine sediments (Teske and Sorensen, 2008). These observations make it unlikely that DSAG performs the type of sulfate-dependent anaerobic methane oxidation known from the archaeal anaerobic methanotrophs (ANME) lineages (Boetius et al, 2000), but rather point to a heterotrophic or mixotrophic life style. Such a life style was recently supported by our own studies, in which we proposed that the DSAG could be involved in the iron cycle, using iron oxide as a terminal electron acceptor while oxidizing organic carbon (Jorgensen et al, 2012)
The results from the QUANTITATIVE PCR (qPCR) measurements show a depth profile with archaeal 16S rRNA gene copy numbers/gram of sediment estimated to be on the order of 108 in the upper layers and declining by approximately two orders of magnitude within the first 2 m
Summary
Archaea are widely distributed around the globe and abundant in both the terrestrial and marine realms, where they display a remarkable diversity (Robertson et al, 2005; Schleper et al, 2005; Brochier-Armanet et al, 2011). Characterized isolates assigned to this domain have been around for almost 100 years (Klebahn, 1919; Dassarma et al, 2010), the majority remain uncharacterized and are only recognized through their genetic fingerprint (Teske and Sorensen, 2008; Cavicchioli, 2011) These fingerprints, mainly obtained in the form of 16S rRNA genes, contain valuable information about the identity and abundance of organisms, but rarely give any clues about their metabolism. This is of particular concern for uncharacterized archaeal (or bacterial) groups with a high abundance and a cosmopolitan distribution, as they might have profound influence on major geochemical cycles. A few months later Vetriani and colleagues published additional www.frontiersin.org
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