Abstract

The achievements made in genomic technology in recent decades are yet to be matched by fast and accurate crop phenotyping methods. Such crop phenotyping methods are required for crop improvement efforts to meet expected demand for food and fibre in the future. This review evaluates the role of proximal remote sensing buggies for field-based phenotyping with a particular focus on the application of currently available sensor technology for large-scale field phenotyping. To illustrate the potential for the development of high throughput phenotyping techniques, a case study is presented with sample data sets obtained from a ground-based proximal remote sensing buggy mounted with the following sensors: LiDAR, RGB camera, thermal infra-red camera and imaging spectroradiometer. The development of such techniques for routine deployment in commercial-scale breeding and pre-breeding operations will require a multidisciplinary approach to leverage the recent technological advances realised in computer science, image analysis, proximal remote sensing and robotics.

Highlights

  • For crop improvement efforts to meet the expected requirement for increased crop yield potential in the coming decades [1,2,3], crop scientists and breeders will need to connect phenotype to genotype with high efficiency [4]

  • Field phenotyping of complex traits associated with biomass development and yield is a laborious process, often involving destructive measurements taken from a subsection of the experimental plot, which may not accurately represent the entire plot and can be subject to individual human operator error

  • We evaluate the role of proximal remote sensing buggies for field-based phenotyping and present a case study to explore the possible traits that can be quantified, where proximal remote sensing is the deployment of sensors on a ground-based platform, in contrast to the remote deployment of sensors using aerial or satellite platforms [13]

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Summary

Introduction

For crop improvement efforts to meet the expected requirement for increased crop yield potential in the coming decades [1,2,3], crop scientists and breeders will need to connect phenotype to genotype with high efficiency [4]. This connection has been partly facilitated through tremendous gains in biotechnology, including marker-assisted selection, association mapping and the increasing availability of low-cost DNA sequence information [5]. We evaluate the role of proximal remote sensing buggies for field-based phenotyping and present a case study to explore the possible traits that can be quantified, where proximal remote sensing is the deployment of sensors on a ground-based platform, in contrast to the remote deployment of sensors using aerial or satellite platforms [13]

Field Phenotyping Platforms
Approaches Available
Phenotyping Sensors for Field Buggies
Limitations
RGB Cameras
LiDAR and Time of Flight Sensors
Spectral Sensing
Fluorescence
Thermal Sensors
Other Sensors
Some Technical Challenges in the Use of Proximal Sensors Mounted on Buggies
Application to Phenotyping
Case Study
LiDAR Subsystem
RGB Camera Subsystem
Hyperspectral Subsystem
Thermal Infrared Camera
Conclusions
Full Text
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