Proton Transport in Mitochondrial UCP2 is Regulated by a Matrix-Oriented Salt-Bridge Network

Abstract

Uncoupling proteins (UCPs) are ion carrier proteins causing regulated proton leak across the mitochondrial inner membrane, thus reducing the rate of ATP synthesis. Despite this important impact, the mechanism of UCP-mediated proton transport has not been fully understood. It has been speculated that the mitochondrial carrier family members contain two interconnected salt-bridge networks facilitating the substrate transport. One of these networks is close to the matrix side (matrix network) and the other is close to the intermembrane space. This study focuses on the role of matrix network on the regulation of proton transport in UCP2. UCP2 and eleven mutants (in matrix network) are expressed recombinantly in the E. coli inner membrane. Six mutants disrupt a single salt-bridge link by maintaining either a single negative (K to Q mutation) or positive (D to N mutation) charge on one end of the salt-bridge (K38Q, K141Q, K239Q, D35N, D138N and D236N). Two mutants (K38Q/K239Q and D138N/D236N) disrupt two salt-bridges, while the other two, lacking three salt-bridges, disrupt the total matrix network (K38Q/K141Q/K239Q and D35N/D138N/D236N). In the last mutant, the matrix network is inversed by switching the salt-bridge forming couples (D35K/K38D/D236K/K239D/D138K/K141D). Results show that the matrix network has a regulatory role, and perturbation of the network increases the rate of proton transport. It seems that individual salt-bridges within the network are cooperatively and equally responsible for regulation of transport. Various alterations of the constituting elements of matrix salt-bridge network do not have a considerable effect on inhibitor-protein interactions. Conformational analysis of the protein (CD and fluorescence) and MD simulations provided molecular insights into the role of UCP2 in proton transport. This study characterizes the physicochemical role of the matrix-oriented salt-bridge network on proton transport in UCP2 and its inhibition by purine nucleotides.