Proteomic study of recombinant adenovirus 5 encoding human p53 by matrix-assisted laser desorption/ionization mass spectrometry in combination with database search

Abstract

The clinical application of recombinant adenoviruses as vectors for gene therapy brings about the need to develop new analytical methodologies for monitoring the quality of the viral production as well as establishing structure–function relationships. A mass spectrometry-based assay has been developed for the characterization of structural proteins of the recombinant adenovirus type 5 vector encoding human p53 tumor suppressor gene. The fingerprinting of the viral proteome was accomplished by integration of MALDI-MS and/or MALDI-PSD-MS with SDS–PAGE and RP-HPLC, followed by database search using MS-Fit and MS-Tag algorithms. Viral proteins (molecular weights ∼10,000–100,000 Da) corresponding to more than 95% of total protein mass were resolved and identified, which include hexon (II), penton base (III), peripentonal hexon-associated protein (IIIa), minor core protein (V), major core protein (VII), and other hexon-associated proteins (VI and VIII). An important finding of our studies was the identification of some precursor proteins (i.e., pVIII) and propeptides of precursor proteins (pVIII, pX, and pVI) present in the adenovirus sample. The information obtained allows direct and accurate assessment of the quality of recombinant adenoviruses.