Abstract

The Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Delta variant has evolved to become the dominant SARS-CoV-2 lineage with multiple sub-lineages and there are also reports of re-infections caused by this variant. We studied the disease characteristics induced by the Delta AY.1 variant and compared it with the Delta and B.1 variants in Syrian hamsters. We also assessed the potential of re-infection by these variants in Coronavirus disease 2019 recovered hamsters 3 months after initial infection. The variants produced disease characterized by high viral load in the respiratory tract and interstitial pneumonia. The Delta AY.1 variant produced mild disease in the hamster model and did not show any evidence of neutralization resistance due to the presence of the K417N mutation, as speculated. Re-infection with a high virus dose of the Delta and B.1 variants 3 months after B.1 variant infection resulted in reduced virus shedding, disease severity and increased neutralizing antibody levels in the re-infected hamsters. The reduction in viral load and lung disease after re-infection with the Delta AY.1 variant was not marked. Upper respiratory tract viral RNA loads remained similar after re-infection in all the groups. The present findings show that prior infection could not produce sterilizing immunity but that it can broaden the neutralizing response and reduce disease severity in case of reinfection.

Highlights

  • Published: 13 March 2022The B.1.617.2 lineage of Severe Acute Respiratory Syndrome Coronavirus-2 (SARSCoV-2) was first detected in India on 22 September 2020 [1]

  • The body weight loss observed in the Delta AY.1 group was significantly lesser in comparison to the Delta variant infection (Figure 2a)

  • The higher rate of transmissibility, increased disease severity and immune evasion potential of the Delta variant has alerted the scientific community to be vigilant about the mutating variants [2,3]

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Summary

Introduction

The B.1.617.2 lineage of Severe Acute Respiratory Syndrome Coronavirus-2 (SARSCoV-2) was first detected in India on 22 September 2020 [1]. The variant spread at an alarming rate to become the most dominant SARS-CoV-2 lineage circulating globally and spread to 201 countries by 2 December 2021 [2]. The amino acid substitutions in the spike protein of the Delta variant, such as D614G, T478K, P681R and L452R, are known to affect transmissibility and neutralization [3]. The Delta variant has been further subdivided into Delta AY. and AY.127 according to the Pango lineage designation system. Among these sub-lineages, AY. and AY. possess the K417N substitution, which is present in the B.1.351 variant, suggesting that it plays a role in immune evasion. As of 6 December 2021, the AY. lineage has been detected in at least

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