Probing the impact of alkyl chain length of imidazolium ionic liquids on the conformational stability of collagen type-I from skin of Lutjanus erythropterus

Abstract

Multispectroscopic techniques and molecular docking study were carried out to inspect the role of concentrations and cationic chain length of ionic liquids (ILs), on the secondary structure of collagen type-I. To attain this objective, a series of imidazolium ILs having same anion (Cl−) and a set of cations with varying chain length were used in this study. The ILs studied utilized are 1-butyl-3-methylimidazolium chloride ([Bmim][Cl]), 1-hexyl-3-methylimidazolium chloride ([Hmim][Cl]), and 1-decyl-3-methylimidazolium chloride ([Dmim][Cl]). The effect of these ILs on collagen type-I was analyzed by using UV-vis, circular dichroism (CD), steady state fluorescence, time resolve fluorescence (TRF), synchronous fluorescence, dynamic light scattering (DLS), fourier transform infrared spectroscopy (FT-IR) and molecular docking approach. The results obtained shows the stability of the collagen was dependent on the alkyl chain length of cation as well as concentration of these ILs. The alteration in hydrogen bonding and hydrophobic interactions due to the different cations of ILs, with the amino acid residues, play a key role in unfolding/destabilization of collagen. Consequently, the destabilization propensity of the ILs toward the collagen increases with increasing chain length of ILs. In addition, when organized in the order of providing destability to collagen triple helix structure, the cations of the ILs obeyed the Hofmeister series. Molecular docking also confirms more hydrophobic interaction and reduced hydrogen bonding due to long alkyl chain length of cations in ILs. The docking results are in agreement with the spectroscopic results and provide the information about the ligand binding site on the protein.