Abstract

In Europe, each year, more than four milion patients acquire a healthcare-associated infection (HAI) and almost 40 thousand die as a direct consequence of it. Regardless of many stategies to prevent and control HAIs, they remain an important cause of morbidity and mortality worldwide with a significant economic impact: a recent estimate places it at the ten billion dollars/year. The control of HAIs requires a prompt and efficient identification of the etiological agent and a rapid communication with the clinician. The Microbiology Laboratory has a significant role in the prevention and control of these infections and is a key element of any Infection Control Program. The work of the Microbiology Laboratory covers microbial isolation and identification, determination of antimicrobial susceptibility patterns, epidemiological surveillance and outbreak detection, education, and report of quality assured results. In this paper we address the role and importance of the Microbiology Laboratory in the prevention and control of HAI and in Antibiotic Stewardship Programs and how it can be leveraged when combined with the use of information systems. Additionally, we critically review some challenges that the Microbiology Laboratory has to deal with, including the selection of analytic methods and the proper use of communication channels with other healthcare services.

Highlights

  • Specialty section: This article was submitted to Antimicrobials, Resistance and Chemotherapy, a section of the journal Frontiers in Microbiology

  • In this paper we address the role and importance of the Microbiology Laboratory in the prevention and control of healthcare-associated infection (HAI) and in Antibiotic Stewardship Programs and how it can be leveraged when combined with the use of information systems

  • Microbiology and Antibiotic-Resistant Healthcare-Associated Infections problems associated with HAIs (Cosgrove, 2006; Neidell et al, 2012): the Centers for Disease Prevention and Control (CDC) estimates that over two million people/year acquire antibiotic resistant infections, and 23,000 die as a result of it (CDC, 2013)

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Summary

Microbial Isolation and Identification

The Microbiology Laboratory main task is to isolate and identify the infection etiological agent (Benbachir, 2008), using the most appropriate, rapid and accurate diagnostic method. The Microbiology Laboratory needs to keep up-todate materials, culture media, reagents, equipment, identification methods and trained personnel (CDC, 2003). The staff needs continuous on-the-job training in microbiological techniques and to be updated on the internationally endorsed methods for isolation and characterization of pathogens (Pfaller and Herwaldt, 1997; Benbachir, 2008). External and internal quality control and assurance programs must be implemented to guarantee the quality of the results (Benbachir, 2008)

Determination of Antimicrobial Susceptibility Patterns
Report of the Results
Surveillance and Outbreak Detection
ANTIBIOTIC STEWARDSHIP PROGRAMS
ISSUES ON THE LABORATORY EFFICACY
Antimicrobial Resistance Surveillance
Molecular methods
CONCLUSION
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