Abstract
Enterocytozoon bieneusi, an obligate intracellular pathogen, can infect various hosts. In this study, 3527 dairy cattle fecal specimens were collected from different geographic locations in China (including 673 from Shandong province, 1,440 from Guangdong province and 1,414 from Gansu province) and examined for the presence of E. bieneusi using polymerase chain reactions targeting the ribosomal internal transcribed spacer (ITS). The dominant genotypes identified were further subtyped by multilocus sequence typing. The overall prevalence of E. bieneusi was 14.2% (501/3527), with a significant difference in prevalence among the different geographical locations (P < 0.001). Our logistic regression analysis showed that all four variables (farming model, location, age, and clinical manifestations) had strong effects on the risk of contracting E. bieneusi. Sequence analysis revealed 11 genotypes: eight known genotypes (J, I, BEB4, BEB10, D, EbpC, CM19, and CM21) and three novel genotypes (named here as CGC1, CGC2, and CGC3). Genotypes J and I, the commonest, were found on all farms across the three provinces. Our linkage disequilibrium analysis showed a clonal population structure in the E. bieneusi dairy cattle population but the ITS genotypes had different population structures. Phylogenetic and haplotype network analysis showed the absence of geographical segregation in the E. bieneusi dairy cattle populations. Instead, they revealed the presence of host adaptation to the E. bieneusi populations in various animals. Our findings augment the current understanding of E. bieneusi transmission dynamics.
Highlights
Microsporidia, a diverse group of emerging opportunistic pathogens with more than 1,300 named species, are classified as fungi (Mathis et al, 2005)
Dairy cattle managed by outdoor-free practices (18.6% positive) showed a significantly higher E. bieneusi prevalence compared with those managed by intensive-closed practices (13.1% positive)
Different infection rates in dairy cattle have been reported for studies from China, including Henan and Ningxia (29.3%), Hebei and Tianjin (19.4%), Shaanxi (19.5%), Xinjiang (17.7%), and Shanghai (26.5%) (Li J. et al, 2016; Wang et al, 2016; Hu et al, 2017; Qi et al, 2017; Tang et al, 2018), and for North America (17.0 and 24.0%) (Fayer et al, 2003; Santín and Fayer, 2009b), Brazil (17.5%), Argentina (14.3%) (Del Coco et al, 2014), and the Czechia (2.5%) (Juránková et al, 2013)
Summary
Microsporidia, a diverse group of emerging opportunistic pathogens with more than 1,300 named species, are classified as fungi (Mathis et al, 2005). Among approximately 17 human infective microsporidia species, Enterocytozoon bieneusi is the most commonly detected (Matos et al, 2012). Some genotypes (I, J, BEB4, and BEB6) from Group 2, which were originally regarded as ruminant-specific, are considered to have reduced host specificity because of the sporadic infections they cause in other hosts including humans (Sak et al, 2011; Zhang et al, 2011; Wang et al, 2013; Jiang et al, 2015), implying the possibility of them having zoonotic transmission
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