Abstract

Spatial clustering of ribosomal proteins (r-proteins) through tertiary interactions is a striking structural feature of the eukaryotic ribosome. However, the functional importance of these intricate inter-connections, and how they are established is currently unclear. Here, we reveal that a conserved ATPase, Fap7, organizes interactions between neighboring r-proteins uS11 and eS26 prior to their delivery to the earliest ribosome precursor, the 90S. In vitro, uS11 only when bound to Fap7 becomes competent to recruit eS26 through tertiary contacts found between these r-proteins on the mature ribosome. Subsequently, Fap7 ATPase activity unloads the uS11:eS26 subcomplex onto its rRNA binding site, and therefore ensures stoichiometric integration of these r-proteins into the 90S. Fap7-depletion in vivo renders uS11 susceptible to proteolysis, and precludes eS26 incorporation into the 90S. Thus, prefabrication of a native-like r-protein subcomplex drives efficient and accurate construction of the eukaryotic ribosome.

Highlights

  • Ribosomes are the universal molecular machines responsible for the final step of translating genetic information into proteins

  • Enp1-Tandem affinity purifications (TAP) was isolated from indicated strains and subjected to Western analysis. uS7 and CBP (TAP-tag) protein levels served as loading controls

  • Indicated strains were grown to mid-log phase at 25 ̊C in selective glucose-containing medium. 20S pre-rRNA was localized by fluorescence in situ hybridization (FISH) using a Cy3-labeled oligonucleotide complementary to the 5’ portion of internal transcribed spacer 1 (ITS1)

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Summary

Introduction

Ribosomes are the universal molecular machines responsible for the final step of translating genetic information into proteins. RNA polymerase I driven production of 35S pre-rRNA initiates eukaryotic ribosome assembly in the nucleolus. The emerging pre-rRNA associates with small subunit r-proteins, and ~100 assembly factors to form the earliest precursor, the 90S (Dragon et al, 2002; Grandi et al, 2002; Kos and Tollervey, 2010). Cleavage within the 35S pre-rRNA releases the small subunit precursor, the 40S pre-ribosome and permits the remaining pre-rRNA to associate with 60S-r-proteins and assembly factors to form the 60S pre-ribosome. Assembly factors are released from ribosome precursors possibly through the action of >50 energy-consuming RNA helicases, AAA-ATPases, ABC-ATPases and GTPases (Kressler et al, 2010; Panse and Johnson, 2010; Strunk and Karbstein, 2009). The precise targets for many of these diverse energy-consuming enzymes remain to be elucidated

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