Prediction of body condition in Jersey dairy cattle from 3D-images using machine learning techniques.

Abstract

The body condition of dairy cows is a crucial health and welfare indicator that is widely acknowledged. Dairy herds with a well-management body condition tend to have more fertile and functional cows. Therefore, routine recording of high-quality body condition phenotypes is required. Automated prediction of body condition from 3D images can be a cost-effective approach to current manual recording by technicians. Using 3D-images, we aimed to build a reliable prediction model of body condition for Jersey cows. The dataset consisted of 808 individual Jersey cows with 2,253 phenotypes from three herds in Denmark. Body condition was scored on a 1 to 9 scale and transformed into a 1 to 5 scale with 0.5-unit differences. The cows' back images were recorded using a 3D camera (Microsoft Xbox One Kinect v2). We used contour and back height features from 3D-images as predictors, together with class predictors (evaluator, herd, evaluation round, parity, lactation week). The performance of machine learning algorithms was assessed using H2O AutoML algorithm (h2o.ai). Based on outputs from AutoML, DeepLearning (DL; multi-layer feedforward artificial neural network) and Gradient Boosting Machine (GBM) algorithms were implemented for classification and regression tasks and compared on prediction accuracy. In addition, we compared the Partial Least Square (PLS) method for regression. The training and validation data were divided either through a random 7:3 split for 10 replicates or by allocating two herds for training and one herd for validation. The accuracy of classification models showed the DL algorithm performed better than the GBM algorithm. The DL model achieved a mean accuracy of 48.1% on the exact phenotype and 93.5% accuracy with a 0.5-unit deviation. The performances of PLS and DL regression methods were comparable, with mean coefficient of determination of 0.67 and 0.66, respectively. When we used data from two herds for training and the third herd as validation, we observed a slightly decreased prediction accuracy compared to the 7:3 split of the dataset. The accuracies for DL and PLS in the herd validation scenario were > 38% on the exact phenotype and > 87% accuracy with 0.5-unit deviation. This study demonstrates the feasibility of a reliable body condition prediction model in Jersey cows using 3D-images. The approach developed can be used for reliable and frequent prediction of cows' body condition to improve dairy farm management and genetic evaluations.