Abstract

The electrical current properties of single-molecule sensing devices based on electronic (tunneling) transport strongly depend on molecule frontier orbital energy, spatial distribution, and position with respect to the electrodes. Here, we present an analysis of the bias dependence of molecule frontier orbital properties at an exemplar case of DNA nucleotides in the gap between H-terminated (3, 3) carbon nanotube (CNT) electrodes and its relation to transversal current rectification. The electronic transport properties of this simple single-molecule device, whose characteristic is the absence of covalent bonding between electrodes and a molecule between them, were obtained using density functional theory and non-equilibrium Green’s functions. As in our previous studies, we could observe two distinct bias dependences of frontier orbital energies: the so-called strong and the weak pinning regimes. We established a procedure, from zero-bias and empty-gap characteristics, to estimate finite-bias electronic tunneling transport properties, i.e., whether the molecular junction would operate in the weak or strong pinning regime. We also discuss the use of the zero-bias approximation to calculate electric current properties at finite bias. The results from this work could have an impact on the design of new single-molecule applications that use tunneling current or rectification applicable in high-sensitivity sensors, protein, or DNA sequencing.

Highlights

  • In the last-generation protein and DNA sequencing devices, the chain-like molecule, driven by an electrophoretic field, translocates through a nanopore [1,2,3,4]

  • We study the bias dependence of the frontier orbitals of DNA nucleotides in the gap between two H-terminated (3, 3) carbon nanotubes (CNTs), employing density functional theory (DFT)

  • Gap regime, electrostatic potential energyofEP(frontier) and their spatial positions driven by the1 empty gapthe electrostatic potential energy

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Summary

Introduction

In the last-generation protein and DNA sequencing devices, the chain-like molecule, driven by an electrophoretic field, translocates through a nanopore [1,2,3,4]. In a subclass of these devices, side-embedded transversal electrodes are placed around the nanopore, and the tunneling current through a single chain monomer is measured for sequence readout [5,6,7,8,9,10]. Experimental realizations of such setups were performed using solid-state nanopores [6,7,11]. The functionalization of electrodes could be beneficial for transversal electronic transport, as it may increase tunneling currents and lower the operating bias of devices [14,17,18,21]

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