Abstract
Abstract: In Sequence alignment, the chains of DNA, RNA, or protein are aligned and compared to recognize homogeneous portions which could be the result of functional, organizational, or evolutionary connections between the chains. This process gives similar sequences as its result. Similar sequences often have the same biological function. This knowledge can be used to draw further conclusions that we can ascertain the function of a query DNA sequence by comparing it with a target sequence performing a known function. In this article, we use this idea to develop an Advanced Java-based web application where the user interface allows the user to enter an unknown DNA sequence. Using pattern-matching algorithms, the application can calculate how similar the sequence is with genes stored in a database. Based on the result, a trained medical practitioner will be able to determine whether the unknown gene can be cancerous
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