Abstract

Tumor suppressor protein p53 is regulated by two structurally homologous proteins, Mdm2 and MdmX. In contrast to Mdm2, MdmX lacks ubiquitin ligase activity. Although the essential interactions of MdmX are known, it is not clear how they function to regulate p53. The regulation of tumor suppressor p53 by Mdm2 and MdmX in response to DNA damage was investigated by mathematical modeling of a simplified network. The simplified network model was derived from a detailed molecular interaction map (MIM) that exhibited four coherent DNA damage response pathways. The results suggest that MdmX may amplify or stabilize DNA damage-induced p53 responses via non-enzymatic interactions. Transient effects of MdmX are mediated by reservoirs of p53∶MdmX and Mdm2∶MdmX heterodimers, with MdmX buffering the concentrations of p53 and/or Mdm2. A survey of kinetic parameter space disclosed regions of switch-like behavior stemming from such reservoir-based transients. During an early response to DNA damage, MdmX positively or negatively regulated p53 activity, depending on the level of Mdm2; this led to amplification of p53 activity and switch-like response. During a late response to DNA damage, MdmX could dampen oscillations of p53 activity. A possible role of MdmX may be to dampen such oscillations that otherwise could produce erratic cell behavior. Our study suggests how MdmX may participate in the response of p53 to DNA damage either by increasing dependency of p53 on Mdm2 or by dampening oscillations of p53 activity and presents a model for experimental investigation.

Highlights

  • The transcription factor p53 is a tumor suppressor that causes cell cycle arrest or apoptosis in response to stress signals [1]

  • We examined mathematical network models to address the role of MdmX in regulating the dynamics of p53 activity in relation to Mdm2

  • A Molecular Interaction Map (MIM) akin to a circuit diagram of an electric device can give a comprehensive view of cellular processes and help understand complex protein functions in cells

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Summary

Introduction

The transcription factor p53 is a tumor suppressor that causes cell cycle arrest or apoptosis in response to stress signals [1]. Excessive p53 protein results in premature aging [2] and cell death [1]. Maintaining appropriate levels of p53 is essential for cell survival. Mdm and MdmX are structurallyrelated p53-binding proteins that play a key role in regulating the level of p53 [3]. MdmX can interfere with p53-Mdm negative feedback loop by interacting with those two molecules. As indicated by diverse effects of MdmX in biological experiments [15,16,17,18], it is not intuitively obvious what the consequence of that interference would be. We examined mathematical network models to address the role of MdmX in regulating the dynamics of p53 activity in relation to Mdm

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