Abstract

A concern for researchers planning multisite studies is that scanner and T1-weighted sequence-related biases on regional volumes could overshadow true effects, especially for studies with a heterogeneous set of scanners and sequences. Current approaches attempt to harmonize data by standardizing hardware, pulse sequences, and protocols, or by calibrating across sites using phantom-based corrections to ensure the same raw image intensities. We propose to avoid harmonization and phantom-based correction entirely. We hypothesized that the bias of estimated regional volumes is scaled between sites due to the contrast and gradient distortion differences between scanners and sequences. Given this assumption, we provide a new statistical framework and derive a power equation to define inclusion criteria for a set of sites based on the variability of their scaling factors. We estimated the scaling factors of 20 scanners with heterogeneous hardware and sequence parameters by scanning a single set of 12 subjects at sites across the United States and Europe. Regional volumes and their scaling factors were estimated for each site using Freesurfer's segmentation algorithm and ordinary least squares, respectively. The scaling factors were validated by comparing the theoretical and simulated power curves, performing a leave-one-out calibration of regional volumes, and evaluating the absolute agreement of all regional volumes between sites before and after calibration. Using our derived power equation, we were able to define the conditions under which harmonization is not necessary to achieve 80% power. This approach can inform choice of processing pipelines and outcome metrics for multisite studies based on scaling factor variability across sites, enabling collaboration between clinical and research institutions.

Highlights

  • The pooled or meta-analysis of regional brain volumes derived from T1-weighted MRI data across multiple sites is reliable when data is acquired with similar acquisition parameters (Cannon et al, 2014; Ewers et al, 2006; Jovicich et al, 2006)

  • In this study we report on the region of interest (ROI) relevant to the disease progression of multiple sclerosis (MS), which include the gray matter volume (GMV), subcortical gray matter volume, cortex volume, cortical white matter volume, and the volumes of the lateral ventricle (LV), amygdala, thalamus, hippocampus, caudate

  • The majority of scan–rescan reliabilities were greater than 80% for the selected Freesurfer-derived volumes, which included gray matter volume (GMV), cortical white matter volume, cortex volume, lateral ventricle (LV), thalamus, amygdala

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Summary

Introduction

The pooled or meta-analysis of regional brain volumes derived from T1-weighted MRI data across multiple sites is reliable when data is acquired with similar acquisition parameters (Cannon et al, 2014; Ewers et al, 2006; Jovicich et al, 2006). The unusually large sample size enabled this consortium to provide robust phenotypic traits despite the variability of non-standardized MRI volumetrics and the power required to run a genome wide association study (GWAS) to identify modest effect sizes (Thompson et al, 2014). These studies raise the following question: Is there a middle ground between fully standardizing a set of MRI scanners and recruiting thousands of subjects across a large number of sites? These studies raise the following question: Is there a middle ground between fully standardizing a set of MRI scanners and recruiting thousands of subjects across a large number of sites? Eliminating the harmonization requirement for a multisite study would facilitate inclusion of retrospectively acquired data and data from sites with ongoing longitudinal studies that would not want to adjust their acquisition parameters

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