Potentiometric characterization of ethidium bromide and of its reactions with nucleic acids

Abstract

A liquid membrane electrode that allows the concentration of ethidium ion (Ed +) to be measured selectively and accurately in the range of 0.1 μM to 5 mM is made. For Ed + concentrations less than 1 μM or more than 0.1 mM, the trend is no longer linear, and the causes of this behavior are discussed. The mean activity coefficient of ethidium bromide exhibits deviations from the Debye–Hückel limiting law that are interpreted in terms of aggregate formation. The stability constants for Ed 2 2 + and Ed 2Br + are 230 kg mol −1 and 3.0 × 10 4 kg 2 mol −2, respectively. In NaCl solutions, clusters involving up to 4 Ed + units are detected and their stability constants are evaluated. The intercalation of ethidium into poly(A) · poly(U) in 1 M NaCl is investigated by the above electrode, and the results are compared with those obtained by spectrophotometry. The data are analyzed in terms of Scatchard plots. The potentiometric method is more accurate than the spectrophotometric one at low values of the binding degree ( r) where negative deviations from linearity are observed. The deviations are ascribed to a cooperative behavior rather than to artifacts caused by minor systematic errors.